Hi Simon,
This error indicates that the PepXMLViewer failed when it tried to
index your pepxml file. .pepprophet.xml is not a normal extension
produced by the TPP for a pepXML file. Can you describe exactly how
you arrived at this pepXML file?
Thanks,
-David
On Wed, Jun 9, 2010 at 1:46 AM, Sim
Dear Group,
I ran xinteract on a pepXML file that was generated from a Mascot
search, and it exited with an error message.
command "/mnt/sanfs/APCF-PROD/APCF_WEB/tpp/cgi-bin/PepXMLViewer.cgi -
I /mnt/sanfs/APCF-PROD/results/tpp/2010-06-08/simon-
J2468.pepprophet.xml" exited with non-zero exit cod
They're actually the same parameter listed twice in the options.
"-p0" is a specific example of "-p" where num=0.0.
On Sun, Jan 24, 2010 at 7:48 PM, Simon Michnowicz
wrote:
> Dear Group,
> I was wondering if someone could explain the two similar command line
> options for xinteract
>
Dear Group,
I was wondering if someone could explain the two similar command line
options for xinteract
-p0 [do not discard search results with PeptideProphet
probabilities below 0.05]
-p [filter results below PeptideProphet probability
; default =0.05]
Is *-p0* the sa
