Hello David!
I have the same problem. After running the command I've got this info
message:
C:/TPP/bin/xinteract (TPP v5.1.0 Syzygy, Build 201711031215-7670
(Windows_NT-x86_64))
PPM mode in Accurate Mass Model ...
C:\TPP\bin\mkdir.exe: cannot create directory `/tmp\a04048\': File exists
Looks like this is not an error message but some information. It seems
that the process actually got past this point. Are you certain that the
command dies here? Can you see the output file interact.pep.xml in your
working directory? You can try deleting the directory C: /tmp/a04316/ to
seeing
Hi David,
Still encountered the problem.
C:/TPP/bin/xinteract (TPP v5.1.0 Syzygy, Build 201711031215-7670
(Windows_NT-x86_64))
PPM mode in Accurate Mass Model ...
C:\TPP\bin\mkdir.exe: cannot create directory `/tmp\a04316\': File exists
command "C:\TPP\bin\mkdir.exe -p "/tmp/a04316/"" failed:
Hi David,
All the xml files are generated by Comet search in command line. Ok, I will
revise the file names to meet the requirements and run PeptideProphet again.
Wish everything go right.
Thanks.
Regards,
Elkan
发自我的 iPad
> 在 2017年11月17日，22:47，David Shteynberg
Hello Elkan,
Although unlikely, the dashes in your filename could be the issue. In my
email on this thread I mentioned that only alphanumerics and underscores
"_" should be utilized. If that fails there is a problem with the pep.xml
file itself, that you would need to troubleshoot. How was the
I'm using the newest version of TPP, but encountered the same error when
using PeptideProphet. The file name I used looks like
I08-F4-SAX1.pep.xml
Any solution?
Thanks.
Elkan
在 2017年6月20日星期二 UTC+8上午1:28:34，David Shteynberg写道：
>
> Hello Ada,
>
> One immediate problem I notice is that your
Hello,
I was trying to run peptide analysis with PeptideProphet but it keeps
showig me error...
I was using dimethyl labeling technique and peptides were identified using
Mascot. I exported all data from Mascot, uploaded here and it fails to do
anything. I was wondering whether anyone could
