Re: [typhon] Unit tests

2016-02-18 Thread Oliver Lemke
Hi, > On 18 Feb 2016, at 12:15, Gerrit Holl wrote: > > Hi, > > I have so far been a bad boy and not done any proper test driven > development or indeed any unit tests. What are the plans for typhon? > Writing unit tests is time consuming but I've repeatedly had > situations where a unit test c

Re: [typhon] Typhon dependencies for Python and 3rd party packages

2016-02-18 Thread Oliver Lemke
Hi, > On 18 Feb 2016, at 12:10, Gerrit Holl wrote: > > Hi, > > On 18 February 2016 at 06:50, Oliver Lemke > wrote: >>> currently, typhon has a dependency on Python 3.3, numpy (no version >>> specified), and scipy (the same). >> >> To be hones

[typhon] Typhon now available for anaconda

2016-02-25 Thread Oliver Lemke
Hi all, We're happy to announce that typhon can now be directly installed in anaconda environments without a detour through pip. To install typhon just run: conda install -c rttools typhon If you're not using anaconda for your python workflow yet, we highly recommend to give it a try: http://

Re: [typhon] Add svnversion to unpublished versions?

2016-02-28 Thread Oliver Lemke
Hi Gerrit, > On 26 Feb 2016, at 17:06, Gerrit Holl wrote: > > [snip] > > Would it be wise to add the svnversion to any unreleased version of > typhon, such that the version would be 0.2.7+9733, until we reach > 0.2.8? Although I'm usually an opponent of svn keywords ;-), it makes perfect sense

Re: [typhon] [s-c-rt] r9734 - in typhon/trunk: . typhon

2016-03-19 Thread Oliver Lemke
Hi Gerrit, > On 17 Mar 2016, at 19:46, Gerrit Holl wrote: > > Hi, > > On 29 February 2016 at 07:10, artswebserv...@gmail.com > wrote: >> Log: >> * typhon/__init__.py: >> >> Add revision to version number for development releases. > > $Revision$ in __init__.py won't work, regrettably. This i

Re: [typhon] progressbar

2016-04-14 Thread Oliver Lemke
Hi Gerrit, Let's keep it optional for now. cheers, /oliver > On 23 Mar 2016, at 20:13, Gerrit Holl wrote: > > Hi, > > I'd like to add some progressbars to routines, > > https://pypi.python.org/pypi/progressbar2 > > can we add this as a dependency or shall I write my code such that > this i

Re: [typhon] [s-c-rt] r9917 - in typhon/trunk: . doc typhon typhon/datasets typhon/geodetic typhon/physics

2016-09-18 Thread Oliver Lemke
Hi Gerrit, > On 16 Sep 2016, at 13:31, Gerrit Holl wrote: > > Hi, > > On 12 August 2016 at 14:55, artswebserv...@gmail.com > wrote: >> Added: >> typhon/trunk/typhon/thermodynamics.py > >> * typhon/thermodynamics.py: >> >> Currently containing functions related to water vapor and its thermo

Re: [typhon] [s-c-rt] r10034 - in typhon/trunk: . typhon/physics/units

2016-10-11 Thread Oliver Lemke
Hi Gerrit, > On 7 Oct 2016, at 16:04, Gerrit Holl wrote: > > On 7 October 2016 at 14:58, Lukas Kluft wrote: > >> But I definitely support your point on unit testing. > > And which means that to do it properly, we need not only unit testing, > but unit testing using (at least) the oldest offic

Re: [typhon] [s-c-rt] r10163 - in typhon/trunk: . doc typhon

2016-12-11 Thread Oliver Lemke
Hi Gerrit, > On 9 Dec 2016, at 16:40, Gerrit Holl wrote: > > On 7 December 2016 at 13:38, artswebserv...@gmail.com > wrote: >> Author: lkluft >> Log: >> * typhon/spectroscopy.py: >> >> Module for spectroscopy related functions. Currently containing a function >> to calculte the width (full-wid

Re: [typhon] typhon trac component

2017-01-09 Thread Oliver Lemke
Hi Gerrit, > On 6 Jan 2017, at 12:24, Gerrit Holl wrote: > > Hi, > > I added a ticket on trac related to typhon but there is currently no > typhon component. I'm not sure if I can add this myself or if this > requires higher privileges than I have. Oliver, do you know if I can > add a compone

Re: [typhon] xarray dependency?

2017-01-30 Thread Oliver Lemke
Hi Gerrit, Since xarray is available as an anaconda package and developed by the well-known pydata community, I think it is okay to depend on it. As long as we don't require a newer version than the one available in the anaconda repository. cheers, /oliver > On 26 Jan 2017, at 17:32, Gerrit H

Re: [typhon] [s-c-rt] r10280 - in typhon/trunk: . typhon/physics typhon/physics/tests

2017-02-26 Thread Oliver Lemke
Hi Gerrit, > On 6 Feb 2017, at 15:43, Gerrit Holl wrote: > > On 6 February 2017 at 14:40, Gerrit Holl wrote: >> On 6 February 2017 at 13:56, Lukas Kluft wrote: >>> I had a look at your SRF class but was not able to use it. I get >>> DimensionalityError when trying to create an object. >>> >>>

Re: [typhon] [arts-users] Examples

2017-02-26 Thread Oliver Lemke
Hi Olivier, The SRF class is unit-aware. This means that all values you pass in, must have the correct unit attached. E.g.: import typhon typhon.physics.units.SRF([1e9] * typhon.physics.units.ureg.Hz, [1]) Unfortunately, there is currently a problem with our SRF class which makes it incompatib

Re: [typhon] [s-c-rt] r10280 - in typhon/trunk: . typhon/physics typhon/physics/tests

2017-02-27 Thread Oliver Lemke
> On 27 Feb 2017, at 16:30, Gerrit Holl wrote: > > Hi, > > > > On 27 February 2017 at 06:38, Oliver Lemke > wrote: >> Hi Gerrit, >> >>> On 6 Feb 2017, at 15:43, Gerrit Holl wrote: >>> >>> On 6 February 2017 at 14:40, Ge

[typhon] Documentation restructured

2017-02-28 Thread Oliver Lemke
Hi all, I've restructured the documentation to provide a cleaner overview of what's available. Compare for example the ARTS module documentation: Before: http://www.radiativetransfer.org/misc/typhon/doc/typhon.arts.html After: http://www.radiativetransfer.org/misc/typhon/doc-trunk/typhon.arts.h

Re: [typhon] [s-c-rt] r10375 - in typhon/trunk: . typhon/datasets typhon/physics/units typhon/utils

2017-03-27 Thread Oliver Lemke
Hi Gerrit, While having the possibility to use UTF-8 characters in variable names in Python is certainly a neat feature, I have concerns about the usability and maintainability of such code. I hope you agree that using UTF-8 characters in function names or keywords (which you don't do here) wou

Re: [typhon] Conditional Python 3.6 code

2017-06-08 Thread Oliver Lemke
Hi Gerrit, It would be fine to add it like that. But can you explain the difference between your class and the default IntFlag behaviour? Enumeration values seem to be identical between: class MyClass1(AutoFlag): flag0=enum.auto() # 1 flag1=enum.auto() # 2 flag2=enum.auto()

Re: [typhon] OEM: scipy.linalg.inv vs. numpy.linalg.inv

2017-08-22 Thread Oliver Lemke
Hi Gerrit, Why is it necessary to replace .T with .swapaxes? Could you give an example were the former fails but the latter works? cheers, /oliver > On 22 Aug 2017, at 13:37, Gerrit Holl wrote: > > Hi, > > I need to adapt typhon.oem.retrieval_gain_matrix to allow > broadcasting. That would

[typhon] New release 0.4.0 available

2017-08-30 Thread Oliver Lemke
Hi all, Today we released typhon version 0.4.0. As usual, it is available through pip and the anaconda rttools repository. http://www.radiativetransfer.org/misc/typhon/doc/ You might receive the following error when you import typhon without having a DISPLAY variable set on Unix: In [1]: impo

[typhon] Typhon is moving to github

2017-09-13 Thread Oliver Lemke
Dear friends and developers of typhon, To extend the reach and exposure of the typhon project, as well as profiting from the features of the git version control system, we have come to the conclusion that it is in the best interest of the project to move the typhon repository to github.com . T

Re: [typhon] Typhon is moving to github

2017-09-18 Thread Oliver Lemke
/CONTRIBUTING.md Cheers, Oliver > On 13 Sep 2017, at 14:41, Oliver Lemke wrote: > > Dear friends and developers of typhon, > > To extend the reach and exposure of the typhon project, as well as profiting > from the features of the git version control system, we have come to the &g

[typhon] Git repository push rights for all developers

2017-09-26 Thread Oliver Lemke
Hi all, To remove some overhead to get small changes into typhon, all members of the typhon developers team[1] have now been granted push rights for the main repository. Pull request are still _strongly_ recommended for non-trivial changes. Code reviews are an essential tool for quality assura

[typhon] Typhon version 0.5.0 released

2017-12-05 Thread Oliver Lemke
Hi [TP]y[tp]hon friends, Yesterday, we released Typhon 0.5.0. This version fixes incompatibility with the latest SciPy 1.0 version for users of the PyPi and Anaconda packages. This was the last version to maintain compatibility with Python 3.5. The requirements in the current GitHub version hav

Re: [typhon] wiki?

2018-01-09 Thread Oliver Lemke
Hi Gerrit, > On 2 Jan 2018, at 20:01, Gerrit Holl wrote: > > Hi, > > other github projects I'm on have a wiki link in the top bar, but > typhon has no such link. Does anyone know why? > > When I navigate to https://github.com/atmtools/typhon/wiki I'm simply > redirected back to https://github

Re: [typhon] Gas absorption lookuptables in Typhon

2018-01-18 Thread Oliver Lemke
Hi Frederico, The error you got was a bug in Typhon. It is now fixed in the latest development version[1]. Note: If you use the ARTS interface in Typhon, it is better to call the ARTS ReadXML routine to load the lookup table directly into ARTS instead of using the Typhon reading routine and th

Re: [typhon] citing typhon

2018-02-07 Thread Oliver Lemke
Hi Simon, > On 5 Feb 2018, at 16:10, Simon Pfreundschuh > wrote: > > Dear all, > > Are there any guidelines on how to cite typhon? I couldn't find > anything in the documentation. > > I thought that maybe its also a good idea just to have a bibtex entry > in the README.md on github. There is

Re: [typhon] Typhon setup issue

2018-03-13 Thread Oliver Lemke
Hi Reno, The error messages you get there don't make sense to me. It finds the api in '/Users/reno/OneDrive/Models/arts-2.2.64/build/build/Debug/src/libarts_api.so', so the ARTS_BUILD_PATH settings seem to be okay. No clue why directly afterwards it fails. I have the suspicion that something go

Re: [typhon] Typhon setup issue

2018-03-14 Thread Oliver Lemke
Hi Reno, Are you using cmake to generate an Xcode project and compile ARTS inside Xcode? In that case yes, Xcode does put compiled files directly inside the Debug/Release directory with no additional src subdirectory. According to your previous log file, you had a libarts_api.so in build/build/

Re: [typhon] typhon release?

2018-06-13 Thread Oliver Lemke
Very soon, it is about time indeed. Just wanted to wait till the collocation framework is in good shape. Next week is pretty busy here, so let's aim for week 26? John, do you think we/you are ready for this? :-) Anything else we have to clean up before the release? Cheers, /oliver > On 13

Re: [typhon] typhon release?

2018-06-13 Thread Oliver Lemke
> On 13 Jun 2018, at 11:59, Gerrit Holl wrote: > > On 13 June 2018 at 10:42, Oliver Lemke wrote: >> >> Very soon, it is about time indeed. Just wanted to wait till the collocation >> framework is in good shape. >> >> Next week is pretty busy here, so

[typhon] Typhon release

2018-06-28 Thread Oliver Lemke
Hi all, We are planning to release Typhon 0.6.0 tomorrow (29.6.). If you are aware of any showstoppers that need to be fixed before the release, please let me now today. cheers, /oliver ___ typhon.mi mailing list typhon.mi@lists.uni-hamburg.de https:

[typhon] Anaconda + Python 3.7

2018-07-16 Thread Oliver Lemke
Hi all, Since Anaconda just added full support for the latest Python 3.7 release, I'm happy to announce that compatible packages for typhon are now available on the rttools channel as well. If like living on the bleeding edge, you can now easily set up a Python 3.7 environment with typhon by r

Re: [typhon] controlling autosummary methods?

2019-01-15 Thread Oliver Lemke
Hi Gerrit, > On 14 Jan 2019, at 22:10, Gerrit Holl wrote: > > Hi, > > is there any way to control what methods are being shown with the > autosummary method documentation generation? With regular autoclass > we can control whether inherited methods should be documented or not, > but our autosu

Re: [typhon] release 0.6.1?

2019-01-18 Thread Oliver Lemke
Hi Gerrit, Yes, since quite some time has already passed since the last release, it would fit to make another one. Let's aim for a 0.7 release towards the end of next week. Cheers, Oliver > On 15 Jan 2019, at 17:04, Gerrit Holl wrote: > > Hi, > > shall we have a typhon release soon? > > I

Re: [typhon] Read IASI Level 1 C

2019-11-18 Thread Oliver Lemke
Hi Manik, For just reading the data, it is probably easiest to use CODA[1] directly. If you're using the Anaconda environment, you can install it easily with: conda install -c stcorp coda You then read the IASI File like this: import coda f = coda.open('./W_XX-EUMETSAT-Darmstadt,HYPERSPECT+SO

[typhon] Typhon 0.8.0 released

2020-01-23 Thread Oliver Lemke
Hi all, Time flies, it has been a year since the last release. So we're calling this the "anniversary" release and celebrating by having another one. • Over 250 commits of bug fixes, documentation improvements and other goodies since the previous release • New topography module, using the 1 km

Re: [typhon] Typhon vs PyARTS

2021-02-10 Thread Oliver Lemke
Hi Eric, Your assumption about the transition to PyARTS is correct. The typhon.arts module will be eventually removed. Concerning your OEM retrievals, it is the best approach to facilitate PyARTS for that already now. All current development effort for the ARTS interface is going into PyARTS a

Re: [typhon] feedback

2021-06-21 Thread Oliver Lemke
, bg=True) > wmap = worldmap(secondary["lat"], secondary["lon"], s=24, ax=wmap.axes,) > # colloc only > wmap = worldmap( > collocations['primary/lat'], > collocations['primary/lon'], > facecolor="r", s=128, marker=

Re: [typhon] feedback

2021-07-01 Thread Oliver Lemke
no Picard wrote: > > thnx: about the second point, I made my mind and there's probably no need: > the initial dataset can easily be edited using ".sel" applied to the list of > selected coordinates... > > best, > > Bruno > > Le 22/06/2021 à 08:07,

Re: [typhon] Dear developers, I'm new to ARTS, I have a question about the file:'split-hitran.arts'. could you please help me?

2021-08-11 Thread Oliver Lemke
Hi PingyiDong, > On 5 Aug 2021, at 19:20, 董平夷 <20191205...@nuist.edu.cn> wrote: > > Dear developers, > > I am a postgraduate student in Nanjing University of Information Science and > Technology in China, my name is Pingyi Dong, I am working on remote sensing > ice clouds with sub-millimeter w

Re: [typhon] error on collocation [solved] [-ish]

2021-08-31 Thread Oliver Lemke
gt; >> - the output figures >> >> >> >> Can you help me on this ? >> >> By the way, I can't find a way to increase the level of verbosity for the >> collocate method: did I miss something ? >> >> >> >> best, &g