Re: [OMPI users] Onesided + derived datatypes

2008-12-11 Thread George Bosilca
Dorian, You are right, the datatype generated using the block_index function is a legal data-type. We wrongly determined some overlapping regions in the description [which is illegal based on the MPI standard]. The detection of such overlapping regions being a very expensive process if we

[OMPI users] Axon BTL for OpenMPI?

2008-12-11 Thread Marcus G. Daniels
Hello, I've heard some experimental work has been done to run OpenMPI over the Axon driver as found in IBM triblades. Seems like that should work fine, as it's just another RDMA interface, no? I'd like to use MPI for features like derived types, and moving around non-flat data. Regards,

Re: [OMPI users] Deadlock on large numbers of processors

2008-12-11 Thread Jeff Squyres
On Dec 11, 2008, at 5:30 PM, Justin wrote: The more I look at this bug the more I'm convinced it is with openMPI and not our code. Here is why: Our code generates a communication/execution schedule. At each timestep this schedule is executed and all communication and execution is perform

Re: [OMPI users] Deadlock on large numbers of processors

2008-12-11 Thread Justin
The more I look at this bug the more I'm convinced it is with openMPI and not our code. Here is why: Our code generates a communication/execution schedule. At each timestep this schedule is executed and all communication and execution is performed. Our problem is AMR which means the communi

Re: [OMPI users] Deadlock on large numbers of processors

2008-12-11 Thread Jeff Squyres
George -- Is this the same issue that you're working on? (we have a "blocker" bug for v1.3 about deadlock at heavy messaging volume -- on Tuesday, it looked like a bug in our freelist...) On Dec 9, 2008, at 10:28 AM, Justin wrote: I have tried disabling the shared memory by running with th

Re: [OMPI users] Memchecker report on v1.3b2 (includes potential bug reports)

2008-12-11 Thread Jeff Squyres
Don't change it yet. There's still fairly furious debate about exactly this issue for MPI-2.2. So I wouldn't say that the Forum has agreed to it yet. :-) On Nov 19, 2008, at 3:17 PM, Shiqing Fan wrote: Hi Martin, Thanks for the information. So it will be changed also for memchecker.

Re: [OMPI users] Basic Scatter Operation

2008-12-11 Thread Kevin Anthony Joy
Brock, Matt; thank you both. That has solved my problem. Matt, Thank you for pointing that out, i was starting to get a little confused. I have now replaced them with their respective alternatives: MPI::COMM_WORLD.Get_Rank() and MPI::COMM_WORLD.Get_Size(). Regards, Kevin Joy __

Re: [OMPI users] using of MPI_Publish_name with openmpi

2008-12-11 Thread Bernard Secher - SFME/LGLS
I have the same pb with 1.2.9rc1 version. I don't see any orte-clean utility in this version. But the best is i use the 1.3 version. Thanks to give me more details about ompi-server in the 1.3 version. Regards Bernard Bernard Secher - SFME/LGLS a écrit : I use first 1.2.5 version then 1.2.8 v

Re: [OMPI users] using of MPI_Publish_name with openmpi

2008-12-11 Thread Bernard Secher - SFME/LGLS
I use first 1.2.5 version then 1.2.8 version. When the 1.3 version will be available? Before i try to use svn version. Thanks to give me more details. Best regards Bernard Aurélien Bouteiller a écrit : Bernard, Could you give us more details on the version of Open MPI you are using ? I supp