Re: [OMPI users] network timeout

2012-12-13 Thread marco atzeri
On 11/24/2012 4:02 PM, Ralph Castain wrote: Try limiting the interfaces we use to see if that's really the problem. I forget if cygwin has "ifconfig" or not, but use a tool to report the networks, and then start excluding them by adding -mca oob_tcp_if_exclude foo,bar to your cmd line until y

Re: [OMPI users] Stream interactions in CUDA

2012-12-13 Thread Shamis, Pavel
Sounds like self btl does not support CUDA IPC. Pavel (Pasha) Shamis --- Computer Science Research Group Computer Science and Math Division Oak Ridge National Laboratory On Dec 13, 2012, at 11:46 AM, Justin Luitjens wrote: Thank you everyone for your responses. I believe I have narrowed do

Re: [OMPI users] Stream interactions in CUDA

2012-12-13 Thread Justin Luitjens
Thank you everyone for your responses. I believe I have narrowed down the cause of this. But first I'll respond to some of the points raised. The problem is not related to receiving more then sending. The MPI spec states that the receive size can be larger then the send size and you can use

Re: [OMPI users] Cannot run MPI job across nodes using OpenMPI in F17

2012-12-13 Thread Jeff Squyres
The name "Beowulf Cluster" typically refers to systems that used the bproc environment, which kinda fell out of common use a few years ago. I'm guessing that your problem is because you have some kind of firewalling enabled on your nodes. Try disabling all firewalling (e.g., disable the iptabl

Re: [OMPI users] Cannot run MPI job across nodes using OpenMPI in F17

2012-12-13 Thread Ng Shi Wei
I am using openmpi-1.6.3. What do you meant with "We stopped supporting bproc after the 1.2 series, though you could always launch via ssh." ? Best Regards,Shi Wei. From: r...@open-mpi.org List-Post: users@lists.open-mpi.org Date: Thu, 13 Dec 2012 06:37:56 -0800 To: us...@open-mpi.org Subject: Re

Re: [OMPI users] Cannot run MPI job across nodes using OpenMPI in F17

2012-12-13 Thread Ralph Castain
What version of OMPI are you running? We stopped supporting bproc after the 1.2 series, though you could always launch via ssh. On Dec 12, 2012, at 10:25 PM, Ng Shi Wei wrote: > Dear all, > > I am new in Linux and clustering. I am setting up a Beowulf Cluster using > several PCs according to

Re: [OMPI users] Stream interactions in CUDA

2012-12-13 Thread Rolf vandeVaart
Hi Justin: I assume you are running on a single node. In that case, Open MPI is supposed to take advantage of the CUDA IPC support. This will be used only when messages are larger than 4K, which yours are. In that case, I would have expected that the library would exchange some messages and

Re: [OMPI users] Error in configuring hwloc(hardware locality) on Linux on System Z

2012-12-13 Thread Brice Goglin
Le 13/12/2012 10:45, Shikha Maheshwari a écrit : > Hi, > > We are trying to build 'hwloc 1.4.2' on Linux on System Z. To build hwloc Hello, If you are really talking about hwloc, you should contact this mailing list Hardware locality user list (Open MPI and hwloc are different software, even

[OMPI users] Error in configuring hwloc(hardware locality) on Linux on System Z

2012-12-13 Thread Shikha Maheshwari
Hi, We are trying to build 'hwloc 1.4.2' on Linux on System Z. To build hwloc, need to perform the following steps: - ./configure - gmake all install We are getting error while performing first step i.e. running configure script. error message is : configure: error: No atomic primitives availab

Re: [OMPI users] problem configuring openmpi-1.6.4a1r27643 on Linux

2012-12-13 Thread Siegmar Gross
Hi, > Can you send the config.log for the platform where it failed? > > I'd like to see the specific compiler error that occurred. I found the error with your hint. For Open MPI 1.6.x I must also specify "F77" and "FFLAGS" for the Fortran 77 compiler. Otherwise it uses "gfortran" from the GNU pa

[OMPI users] Cannot run MPI job across nodes using OpenMPI in F17

2012-12-13 Thread Ng Shi Wei
Dear all, I am new in Linux and clustering. I am setting up a Beowulf Cluster using several PCs according to this guide http://www.tldp.org/HOWTO/html_single/Beowulf-HOWTO/. I have setup and configure accordingly except for NFS part. Because I am not requiring it for my application. I have set