Re: [OMPI users] openmpi-2.0.1

On Nov 17, 2016, at 3:43 PM, Gilles Gouaillardet wrote: > > if it still does not work, you can > cd ompi/tools > make V=1 > > and post the output Let me add to that: if that doesn't work, please send all the information listed here:

Re: [OMPI users] openmpi-2.0.1

Hi, at first, you might want to remove path related to Intel MPI runtime (e.g. /opt/intel/composer_xe_2013_sp1.2.144/mpirt/lib/intel64) from your environment if you are using bash, double check you export LD_LIBRARY_PATH (otherwise echo $LD_LIBRARY_PATH and the linker see different things) then

Re: [OMPI users] openmpi-2.0.1

That's a stumper. Only thing I can think of is that the LD_LIBRARY_PATH is being overwritten somewhere inside the Makefile, or perhaps that it isn't properly exported...? As a graspable straw, try $ set -a to export all variables, then $ source

Re: [OMPI users] openmpi-2.0.1

The .configure is: ./configure PREFIX=/opt/openmpi-2.0.1-intel-14.0.2 CC=icc CXX=icpc F77=ifort FC=ifort and the output from printenv | grep LIBRARY is:

Re: [OMPI users] openmpi-2.0.1

Can you include your entire ./configure line? Also, it would be useful, perhaps to look at the output of $ printenv | grep LIBRARY to make sure that all Intel library paths made it into the appropriate variables. When I build 1.10.2, I had these:

Re: [OMPI users] openmpi-2.0.1

Yes, ifort -v and icpc -v give ifort version 14.0.2 and icpc version 14.0.2 (gcc version 4.8.0 compatibility) Bill Professor W P Jones, FREng Department of Mechanical Engineering Imperial College London Exhibition Road London SW7 2AZ Tel:+44 (0)20 7594 7037/7033 Mobile +44 (0)776 495

Re: [OMPI users] openmpi-2.0.1

On 11/17/2016 8:45 AM, Professor W P Jones wrote: > Hi > > I am trying to install openmpi-2.0.1 togeter with the version 14.0.2 > intel compilers and I an having problems. The configure script with > CC=icc CXX=icpc and FC=ifort runs successfully but when i issue make > all install this fails

[OMPI users] openmpi-2.0.1

Hi I am trying to install openmpi-2.0.1 togeter with the version 14.0.2 intel compilers and I an having problems. The configure script with CC=icc CXX=icpc and FC=ifort runs successfully but when i issue make all install this fails with the output: Making all in tools/ompi_info make[2]:

Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2

> > Regards, > > > > _MAC > > > > *From:* users [mailto:users-boun...@lists.open-mpi.org] *On Behalf Of *Limin > Gu > *Sent:* Tuesday, October 11, 2016 7:33 PM > > *To:* Open MPI Users <users@lists.open-mpi.org> > *Subject:* Re: [OMPI user

Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2

ct: Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2 Thank you very much, MAC! Limin On Tue, Oct 11, 2016 at 10:15 PM, Cabral, Matias A <matias.a.cab...@intel.com<mailto:matias.a.cab...@intel.com>> wrote: Building psm2 should not be complicated (in case you c

Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2

; Note that newer rpm are named hfi1-psm* > > > > > > _MAC > > > > *From:* users [mailto:users-boun...@lists.open-mpi.org] *On Behalf Of *Limin > Gu > *Sent:* Tuesday, October 11, 2016 6:44 PM > *To:* Open MPI Users <users@lists.open-mpi.org> >

Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2

Users <users@lists.open-mpi.org> Subject: Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2 Thanks Gilles! Limin On Tue, Oct 11, 2016 at 9:33 PM, Gilles Gouaillardet <gil...@rist.or.jp<mailto:gil...@rist.or.jp>> wrote: Limin, It seems libpsm2 pr

Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2

e a little more info about the version being used. >> Some things to share: >> >> >> >> >rpm -qi libpsm2-0.7-4.el7.x86_64 >> >> > objdump –p /usr/lib64/libpsm2.so |grep SONAME >> >> >nm /usr/lib64/libpsm2.so |grep psm2_mq_irecv2 (will not w

Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2

users@lists.open-mpi.org <mailto:users@lists.open-mpi.org>> *Subject:* [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2 Hi All, I am trying to build openmpi 2.0.1 on a CentOS 7.2 system, and I have following libpsm2 packages installed: libpsm2-0

Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2

lib > Stripped) > > > > > > Thanks, > > _MAC > > > > *From:* users [mailto:users-boun...@lists.open-mpi.org] *On Behalf Of *Limin > Gu > *Sent:* Tuesday, October 11, 2016 2:58 PM > *To:* Open MPI Users <users@lists.open-mpi.org> > *Subject:* [OMPI users

Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2

>Stripped) > > > Thanks, > _MAC > > From: users [mailto:users-boun...@lists.open-mpi.org] On Behalf Of Limin Gu > Sent: Tuesday, October 11, 2016 2:58 PM > To: Open MPI Users <users@lists.open-mpi.org> > Subject: [OMPI users] Openmpi 2.0.1 build --with-psm2

Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2

.so |grep psm2_mq_irecv2 (will not work if the lib >Stripped) Thanks, _MAC From: users [mailto:users-boun...@lists.open-mpi.org] On Behalf Of Limin Gu Sent: Tuesday, October 11, 2016 2:58 PM To: Open MPI Users <users@lists.open-mpi.org> Subject: [OMPI users] Openmpi 2.0.1 build --with-psm

[OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2

Hi All, I am trying to build openmpi 2.0.1 on a CentOS 7.2 system, and I have following libpsm2 packages installed: libpsm2-0.7-4.el7.x86_64 libpsm2-compat-0.7-4.el7.x86_64 libpsm2-compat-devel-0.7-4.el7.x86_64 libpsm2-devel-0.7-4.el7.x86_64 I added --with-psm2 to my configure, but it failed:

Re: [OMPI users] openmpi-2.0.1 build error: multiple definition of `pmi_opcaddy_t_class'

Yes, that is the plan :-) the patch (pending for review) can be downloaded at https://patch-diff.githubusercontent.com/raw/open-mpi/ompi/pull/2131.patch (and the Pull Request is at https://github.com/open-mpi/ompi/pull/2131/files) Cheers, Gilles On 9/28/2016 3:36 AM, Limin Gu wrote:

Re: [OMPI users] openmpi-2.0.1 build error: multiple definition of `pmi_opcaddy_t_class'

Thanks Gilles! I added "static" keyword as you suggested, the build succeeded. Will this be fixed in later release? Thanks again! *Limin Gu* | Software Engineer *Penguin Computing* 45800 Northport Loop West Fremont, CA 94 538 *p.* *415.954.2800

Re: [OMPI users] openmpi-2.0.1 build error: multiple definition of `pmi_opcaddy_t_class'

Hi, I can see this error happening if you configure with --disable-dlopen --with-pmi In opal/mca/pmix/s?/pmix_s?.c, you can try to add the static keyword before OBJ_CLASS_INSTANCE(pmi_opcaddy_t, ...) Or you can update the files to use unique class name (probably safer...) Cheers, Gilles On

[OMPI users] openmpi-2.0.1 build error: multiple definition of `pmi_opcaddy_t_class'

Hi, I have openmpi-2.0.1 same build error on Centos 6.8 and Centos 7.2, Any idea what might have caused this problem? Thank you! make[2]: Entering directory `/usr/src/redhat/BUILD/openmpi-2.0.1/opal' CC class/opal_bitmap.lo CC class/opal_free_list.lo CC