Re: [OMPI users] open MPI please recommend a debugger for open MPI

2010-10-29 Thread Ashley Pittman
Not without a list of hostnames it's not any use no, if you can get that, then I have something to work with. From looking around on google -n might help here. Once I have this info you'll need to verify that you are able to ssh to these nodes without a password, that pdsh is installed and

Re: [OMPI users] open MPI please recommend a debugger for open MPI

2010-10-29 Thread Jack Bryan
Hi, this is what I got : -bash-3.2$ qstat -n -u myName clsuter: Req'd Req'd ElapJob ID Username QueueJobname SessID NDS TSK Memory Time S Time

Re: [OMPI users] open MPI please recommend a debugger for open MPI

2010-10-29 Thread Ashley Pittman
Can you try the following and send me the output. qstat -n -u `whoami` @clusterName The output sent before implies that your cluster is called "clusterName" rather than "cluster" which is a little surprising but let's see what it gives us if we query on that basis. Ashley. On 29 Oct 2010,

Re: [OMPI users] open MPI please recommend a debugger for open MPI

2010-10-29 Thread Jack Bryan
thanksI have run padb (the new one with your patch) on my system and got :-bash-3.2$ padb -Ormgr=pbs -Q 48516.cluster$VAR1 = {};Job 48516.cluster is not activeActually, the job is running. How to check whether my system has pbs_pro ? Any help is appreciated. thanksJinxu DingOct. 29 2010 >

Re: [OMPI users] open MPI please recommend a debugger for open MPI

2010-10-29 Thread Ashley Pittman
On 29 Oct 2010, at 12:06, Jeremy Roberts wrote: > I'd suggest looking into TotalView (http://www.totalviewtech.com) and/or DDT > (http://www.allinea.com/). I've used TotalView pretty extensively and found > it to be pretty easy to use. They are both commercial, however, and not > cheap. >

Re: [OMPI users] mixed versions of openmpi ? (1.4.1 and 1.4.3)

2010-10-29 Thread Reuti
Am 29.10.2010 um 18:47 schrieb Jeff Squyres: > On Oct 29, 2010, at 12:40 PM, Reuti wrote: > >>> I'd have to go check 1.4.3 and 1.4.1 to be sure, but I would generally >>> *NOT* assume that different versions like this are compatible. >> >> I'm getting confused, as these versions are exactly

Re: [OMPI users] mixed versions of openmpi ? (1.4.1 and 1.4.3)

2010-10-29 Thread guillaume ranquet
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 I guess we will play it safe and upgrade every cluster at once so that we won't get bad surprises. thank you Jeff. On 10/29/2010 06:40 PM, Reuti wrote: > Hi, > > Am 29.10.2010 um 18:27 schrieb Jeff Squyres: > >> I'd have to go check 1.4.3 and 1.4.1

Re: [OMPI users] mixed versions of openmpi ? (1.4.1 and 1.4.3)

2010-10-29 Thread Jeff Squyres
On Oct 29, 2010, at 12:40 PM, Reuti wrote: >> I'd have to go check 1.4.3 and 1.4.1 to be sure, but I would generally *NOT* >> assume that different versions like this are compatible. > > I'm getting confused, as these versions are exactly fitting "x.(y+1).*" which > you mention below. So they

Re: [OMPI users] mixed versions of openmpi ? (1.4.1 and 1.4.3)

2010-10-29 Thread Reuti
Hi, Am 29.10.2010 um 18:27 schrieb Jeff Squyres: > I'd have to go check 1.4.3 and 1.4.1 to be sure, but I would generally *NOT* > assume that different versions like this are compatible. I'm getting confused, as these versions are exactly fitting "x.(y+1).*" which you mention below. So they

Re: [OMPI users] Need Help for understand heat equation 2D mpi solving version

2010-10-29 Thread Eugene Loh
christophe petit wrote: i am still trying to understand the parallelized version of the heat equation 2D solving that we saw at school. I am confused between the shift of the values near to the bounds done by the "updateBound" routine  and the main loop (at line 161 in main code)  which

Re: [OMPI users] mixed versions of openmpi ? (1.4.1 and 1.4.3)

2010-10-29 Thread Jeff Squyres
I'd have to go check 1.4.3 and 1.4.1 to be sure, but I would generally *NOT* assume that different versions like this are compatible. Open MPI makes an ABI promise (that started with version 1.3.2) that all the releases in a given feature series and its corresponding super-stable series (i.e.,

Re: [OMPI users] open MPI please recommend a debugger for open MPI

2010-10-29 Thread Brian Austin
I find that using mpirun to launch multiple instance of a serial debugger is fairly usable (but not perfect) for jobs with fewer than about four processes. A description of how to do this is here: http://www.open-mpi.org/faq/?category=debugging The biggest drawbacks to this approach are that a)

Re: [OMPI users] open MPI please recommend a debugger for open MPI

2010-10-29 Thread Jeremy Roberts
I'd suggest looking into TotalView (http://www.totalviewtech.com) and/or DDT (http://www.allinea.com/). I've used TotalView pretty extensively and found it to be pretty easy to use. They are both commercial, however, and not cheap. As far as I know, there isn't a whole lot of open source

Re: [OMPI users] cannot install Open MPI 1.5 on Solaris x86_64 with Oracle/Sun C 5.11

2010-10-29 Thread Terry Dontje
Sorry, but can you give us the config line, the config.log and the full output of make preferrably with make V=1? --td On 10/29/2010 04:30 AM, Siegmar Gross wrote: Hi, I tried to build Open MPI 1.5 on Solaris X86 and x86_64 with Oracle Studio 12.2. I can compile Open MPI with thread support,

[OMPI users] failed to install openmpi trunk

2010-10-29 Thread Vasiliy G Tolstov
Hello. I'm try to build orcm , in dependencies it need openmpi trunk with some options have been enabled. Install fails with message: Creating orte-migrate.1 man page... x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../../opal/include -I../../../orte/include

[OMPI users] cannot install Open MPI 1.5 on Solaris x86_64 with Oracle/Sun C 5.11

2010-10-29 Thread Siegmar Gross
Hi, I tried to build Open MPI 1.5 on Solaris X86 and x86_64 with Oracle Studio 12.2. I can compile Open MPI with thread support, but I can only partly install it because "libtool" will not find "f95" although it is available. "make check" shows no failures. tyr openmpi-1.5-SunOS.x86_64.32_cc 188

[OMPI users] Need Help for understand heat equation 2D mpi solving version

2010-10-29 Thread christophe petit
Hello, > > i am still trying to understand the parallelized version of the heat > equation 2D solving that we saw at school. In order to explain my problem, i > need to list the main code : > > 9 program heat > 10 >

[OMPI users] open MPI please recommend a debugger for open MPI

2010-10-29 Thread Jack Bryan
Hi, Would you please recommend a debugger, which can do debugging for parallel processes on Open MPI systems ? I hope that it can be installed without root right because I am not a root user for ourMPI cluster. Any help is appreciated. Thanks Jack Oct. 28 2010