Question #691885 on Yade changed:
https://answers.launchpad.net/yade/+question/691885
Summary changed to:
Example script for thermalEngine
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Question #691921 on Yade changed:
https://answers.launchpad.net/yade/+question/691921
Status: Open => Answered
Robert Caulk proposed the following answer:
Yes you can use body.state.temp to set the temperature of individual
bodies as you like. But keep in mind that particleT0 will set
Question #691921 on Yade changed:
https://answers.launchpad.net/yade/+question/691921
Summary changed to:
Setting particle initial temperatures in thermalEngine
Description changed to:
I am working on thermal hydraulic mechanical modeling. Can we assign different
initial temperature values to d
Question #691885 on Yade changed:
https://answers.launchpad.net/yade/+question/691885
Status: Open => Answered
Robert Caulk proposed the following answer:
I am happy to help you, but please follow our posting guidelines [1] and
keep each thread to one question. These guidelines are in pl
Question #691885 on Yade changed:
https://answers.launchpad.net/yade/+question/691885
Robert Caulk proposed the following answer:
>And also, can we do THM with any kind of body in Yade like box
elements, walls, or clumps?
At the moment, ThermalEngine is only computing conduction between
sphe
Question #691885 on Yade changed:
https://answers.launchpad.net/yade/+question/691885
Robert Caulk proposed the following answer:
See other example scripts for a no-flow scenario and conduction only
validation here [1]. Or simply inside the examples/ThermalEngine folder
AFTER the merge request is
Question #691885 on Yade changed:
https://answers.launchpad.net/yade/+question/691885
Status: Open => Answered
Robert Caulk proposed the following answer:
Hello,
The paper to reference is currently being published by CMAME: " A pore-
scale Thermo-Hydro-Mechanical coupled m
Question #691748 on Yade changed:
https://answers.launchpad.net/yade/+question/691748
Status: Open => Answered
Robert Caulk proposed the following answer:
Hello,
It's an integral of the velocity on the surface of the cell which boils
down to estimating the total flowrate crossing
Question #691645 on Yade changed:
https://answers.launchpad.net/yade/+question/691645
Status: Open => Needs information
Robert Caulk requested more information:
>and compile with CHOLMOD flag ON
What does that mean? We don't have an explicit cholmod flag during
compilation. Plea
Question #691645 on Yade changed:
https://answers.launchpad.net/yade/+question/691645
Status: Open => Answered
Robert Caulk proposed the following answer:
>>2) useSolver was set to zero because Yade 2018.2b gives me error about
not-compiled CHOLMOD when I used 3, but I think I shou
Question #691193 on Yade changed:
https://answers.launchpad.net/yade/+question/691193
Robert Caulk posted a new comment:
> You point out that TesselationWrapper shoudn't be used in non-
periodic boundary conditions.
Nope. I said periodic conditions are not considered in
Tesselatio
Question #691193 on Yade changed:
https://answers.launchpad.net/yade/+question/691193
Status: Needs information => Answered
Robert Caulk proposed the following answer:
Looking at the source code, it looks like the original author (Bruno?)
added a FIXME [1] saying we still need to prope
Question #691193 on Yade changed:
https://answers.launchpad.net/yade/+question/691193
Status: Open => Needs information
Robert Caulk requested more information:
Thankyou, and then increasing the number of particles decreases or
increases the discrepancy?
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Question #691193 on Yade changed:
https://answers.launchpad.net/yade/+question/691193
Status: Open => Needs information
Robert Caulk requested more information:
I suppose the periodic cell volume may not be estimated in the same way
as the periodic tesselationwrapper. Do you notice the s
Question #691021 on Yade changed:
https://answers.launchpad.net/yade/+question/691021
Status: Open => Answered
Robert Caulk proposed the following answer:
> It looks to me like the code actually does en = (en1+en2)/2
>For example, if I test two materials...
Your empirical method se
Question #691009 on Yade changed:
https://answers.launchpad.net/yade/+question/691009
Status: Open => Answered
Robert Caulk proposed the following answer:
Hello,
Thanks a lot for the clear description and the minimal working example
:-).
>FWIW, The fact that et is ignored is mentio
Question #690925 on Yade changed:
https://answers.launchpad.net/yade/+question/690925
Robert Caulk requested more information:
>Yade model is small (8000 particles), the code works well. But when the
same model has 100 particles, I get the following error:
Please provide the system specs
Question #690820 on Yade changed:
https://answers.launchpad.net/yade/+question/690820
Robert Caulk posted a new comment:
You should check to make sure you have write privileges in the directory
you are trying to write to. Then you should check to make sure there is
storage capacity in that
Question #690820 on Yade changed:
https://answers.launchpad.net/yade/+question/690820
Robert Caulk posted a new comment:
also provide output of ls -ld /yourDirHere
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Question #690815 on Yade changed:
https://answers.launchpad.net/yade/+question/690815
Robert Caulk posted a new comment:
This one of the reasons I am always hesitant to put AMD Ryzen chips into
a workstation despite their apparent cost savings.
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Question #690842 on Yade changed:
https://answers.launchpad.net/yade/+question/690842
Robert Caulk proposed the following answer:
I should point out that Paraview is objectively superior to
SnapshotEngine and should be considered the preferred method for post
processing and visualization
Question #690820 on Yade changed:
https://answers.launchpad.net/yade/+question/690820
Status: Open => Needs information
Robert Caulk requested more information:
I ran your script with yadedaily (latest) and did not encounter the
error you describe.
After how many iterations do you see
Question #690820 on Yade changed:
https://answers.launchpad.net/yade/+question/690820
Status: Open => Needs information
Robert Caulk requested more information:
> It should be fine this time.
Please test your scripts. It still has undefined variables and syntax
errors.
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Question #690820 on Yade changed:
https://answers.launchpad.net/yade/+question/690820
Status: Open => Needs information
Robert Caulk requested more information:
The MWE does not reproduce the error you describe. It has syntax errors:
>>>>
sps=SpherePack()
sp=pack.
Question #690820 on Yade changed:
https://answers.launchpad.net/yade/+question/690820
Status: Open => Needs information
Robert Caulk requested more information:
Great, can you go ahead and paste the MWE here? MWE would include as few
lines as possible, would not include anything extrane
Question #690820 on Yade changed:
https://answers.launchpad.net/yade/+question/690820
Status: Open => Needs information
Robert Caulk requested more information:
>My Yade version: try both compiled from the source and yadedaily, same
error
The script you provided has DFNFlowEngine, wh
Question #690815 on Yade changed:
https://answers.launchpad.net/yade/+question/690815
Status: Open => Answered
Robert Caulk proposed the following answer:
Yes, sadly this problem seems very far removed from Yade. I guess the
problem would even occur without yade, so just start Python
Question #690716 on Yade changed:
https://answers.launchpad.net/yade/+question/690716
Robert Caulk posted a new comment:
>1. Yade is compiled from the source (not sure there is a version
number)
DFNFlow is not compiled by default [1]. Did you edit any of the source
files before compilation?
Question #690716 on Yade changed:
https://answers.launchpad.net/yade/+question/690716
Status: Open => Needs information
Robert Caulk requested more information:
Please review [1] and provide the missing information.
[1]https://www.yade-dem.org/wiki/Howtoask
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Question #690732 on Yade changed:
https://answers.launchpad.net/yade/+question/690732
Status: Open => Answered
Robert Caulk proposed the following answer:
Hello,
I guess it depends which function you are using to get porosity.
Probably useful [1].
[1]https://answers.launchpad.net/y
Question #690494 on Yade changed:
https://answers.launchpad.net/yade/+question/690494
Status: Open => Answered
Robert Caulk changed the question status:
Changing status to "Answered" to avoid Launchpad janitor cleanup
automatic removal.
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Question #690573 on Yade changed:
https://answers.launchpad.net/yade/+question/690573
Status: Open => Needs information
Robert Caulk requested more information:
Hello,
Please refrain from asking us to follow links as you've done here [1].
Especially links that you've elected t
Question #690716 on Yade changed:
https://answers.launchpad.net/yade/+question/690716
Robert Caulk posted a new comment:
Also see
[1]https://answers.launchpad.net/yade/+question/690573
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Question #690716 on Yade changed:
https://answers.launchpad.net/yade/+question/690716
Status: Open => Answered
Robert Caulk proposed the following answer:
Hello,
To start, you will need to use DFNFlowEngine, not FlowEngine. This is
not compiled by default and there is no tutorial or exam
Question #690752 on Yade changed:
https://answers.launchpad.net/yade/+question/690752
Status: Open => Answered
Robert Caulk proposed the following answer:
Hello,
FlowEngine is not designed to triangulate polyhedra bodies or estimate
forces on polyhedra bodies, thus I would expect undefi
Question #690741 on Yade changed:
https://answers.launchpad.net/yade/+question/690741
Status: Open => Answered
Robert Caulk proposed the following answer:
Hello,
thanks for reviewing the documentation [1], fixing the offedning line
accordingly, and letting us know if your problem
Question #690691 on Yade changed:
https://answers.launchpad.net/yade/+question/690691
Robert Caulk posted a new comment:
> a MWE
>works nicely with "yade", gives zero motion with "yade -j 3".
>So it seems there is a bug in setPermF for parallel run, compare [2] a
Question #690280 on Yade changed:
https://answers.launchpad.net/yade/+question/690280
Status: Open => Answered
Robert Caulk proposed the following answer:
Resources exist.
[1]https://yade-dem.org/doc/prog.html
[2]http://www.nylxs.com/docs/The%20C++%20Programming.Language.4th.Edition.
Question #690554 on Yade changed:
https://answers.launchpad.net/yade/+question/690554
Status: Open => Answered
Robert Caulk proposed the following answer:
Millions. Yade can exploit MPI now!
Side note, I highly recommend using https://translate.google.com/ to
translate from your nat
Question #690565 on Yade changed:
https://answers.launchpad.net/yade/+question/690565
Status: Open => Answered
Robert Caulk proposed the following answer:
Hello,
Welcome to Yade! The Yade documentation [1] is undoubtedly going to be
your best resource as you move forward. Please use
Question #690348 on Yade changed:
https://answers.launchpad.net/yade/+question/690348
Robert Caulk posted a new comment:
Any difference between this and [1]?
[1]https://answers.launchpad.net/yade/+question/690224
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Question #690234 on Yade changed:
https://answers.launchpad.net/yade/+question/690234
Status: Open => Needs information
Robert Caulk requested more information:
What happens when you define your engines list without Ip2 and Law2?
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Question #690172 on Yade changed:
https://answers.launchpad.net/yade/+question/690172
Status: Open => Invalid
Robert Caulk changed the question status:
User duplicated his/her question.
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Question #690127 on Yade changed:
https://answers.launchpad.net/yade/+question/690127
Robert Caulk posted a new comment:
Well we cannot reproduce your problem because you are using a custom
installation of Yade with custom body attributes. If you desire
assistance, it would be helpful if you
Question #690127 on Yade changed:
https://answers.launchpad.net/yade/+question/690127
Robert Caulk posted a new comment:
It is too long, MWE means minimal working example. I don't have time to
go through it but maybe someone else will ;-)
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Question #690127 on Yade changed:
https://answers.launchpad.net/yade/+question/690127
Robert Caulk posted a new comment:
Please provide a complete script.
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Question #690012 on Yade changed:
https://answers.launchpad.net/yade/+question/690012
Robert Caulk posted a new comment:
Correction 'breakOccurred' needs to be replaced with 'isBroken'.
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Question #690146 on Yade changed:
https://answers.launchpad.net/yade/+question/690146
Status: Open => Needs information
Robert Caulk requested more information:
>How to solve this?
How do we answer this? Please review [1]
[1]https://www.yade-dem.org/wiki/Howtoask
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Question #690012 on Yade changed:
https://answers.launchpad.net/yade/+question/690012
Robert Caulk requested more information:
Please post an MWE so we can stop guessing [1].
[1]https://www.yade-dem.org/wiki/Howtoask
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Question #690012 on Yade changed:
https://answers.launchpad.net/yade/+question/690012
Status: Open => Answered
Robert Caulk proposed the following answer:
Because breakOccurred is always false unless a break has occurred in the
most recent triangulation step [1]. Is the documentation uncl
Question #689826 on Yade changed:
https://answers.launchpad.net/yade/+question/689826
Status: Open => Answered
Robert Caulk proposed the following answer:
https://yade-
dem.org/doc/yade.wrapper.html?highlight=jointaperture#yade.wrapper.FlowEngine.imposeFlux
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Question #689755 on Yade changed:
https://answers.launchpad.net/yade/+question/689755
Robert Caulk posted a new comment:
>For the imposed volume flow rate, this looks like a different question
;-)
Agreed, in an effort to keep this forum organized, please make a new
thread for this question. H
Question #689755 on Yade changed:
https://answers.launchpad.net/yade/+question/689755
Status: Open => Answered
Robert Caulk proposed the following answer:
There does not exist any documentation or example scripts at the moment.
It is a pity since I think the paper you reference is quite n
Question #689619 on Yade changed:
https://answers.launchpad.net/yade/+question/689619
Status: Open => Answered
Robert Caulk proposed the following answer:
This forum is for Yade, which is not the same as LAMMPS. Maybe you seek
[1]?
[1]https://lammps.sandia.gov/mail.html
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Question #689607 on Yade changed:
https://answers.launchpad.net/yade/+question/689607
Robert Caulk proposed the following answer:
Relevant and recent discussion on the topic:
https://answers.launchpad.net/yade/+question/689058
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Question #689607 on Yade changed:
https://answers.launchpad.net/yade/+question/689607
Status: Needs information => Answered
Robert Caulk proposed the following answer:
>which is not applicable in JCFpmMat (as far as I am concerned).
Correct. You will need to add the twisting consider
Question #689607 on Yade changed:
https://answers.launchpad.net/yade/+question/689607
Status: Open => Needs information
Robert Caulk requested more information:
Not without modification of the code. Why do you need CohFrictMat
instead of JCFpmMat?
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Question #689537 on Yade changed:
https://answers.launchpad.net/yade/+question/689537
Status: Open => Needs information
Robert Caulk requested more information:
I'm sorry buy I cannot locate the script you are referring to. A link
would be helpful. Or a minimal working example. [1]
Question #689547 on Yade changed:
https://answers.launchpad.net/yade/+question/689547
Status: Open => Answered
Robert Caulk proposed the following answer:
> getCell((FlowEngineT)arg1, (float)arg2, (float)arg3, (float)pos)
>However, what is (FlowEngineT)arg1, (float)arg2, (float)
Question #689537 on Yade changed:
https://answers.launchpad.net/yade/+question/689537
Status: Open => Answered
Robert Caulk proposed the following answer:
Have you tried only adding plot data if stress[2,2] != 0?
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Question #689547 on Yade changed:
https://answers.launchpad.net/yade/+question/689547
Status: Open => Answered
Robert Caulk proposed the following answer:
Have you noticed [1] yet? It is probably worth reading through so you
can see what you have python access to inflowengine like [2
Question #689485 on Yade changed:
https://answers.launchpad.net/yade/+question/689485
Robert Caulk posted a new comment:
It is ok to make this thread solved, since you can continue using yade
without issue. But the underlying problem that caused the error message
is a problem we need to solve on
Question #689485 on Yade changed:
https://answers.launchpad.net/yade/+question/689485
Robert Caulk posted a new comment:
Sadly, the problem is definitely not solved. This will need to be bug
reported - I will try to do that sometime soon.
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Question #689485 on Yade changed:
https://answers.launchpad.net/yade/+question/689485
Robert Caulk requested more information:
By any chance, does this error only arise when you use the GUI to click
on and inspect bodies?
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Question #689293 on Yade changed:
https://answers.launchpad.net/yade/+question/689293
Status: Open => Answered
Robert Caulk proposed the following answer:
The infinite K1 warning is just that, a warning.
If you have a regular packing like I assume you do here, the voronoi
centers of ce
Question #689337 on Yade changed:
https://answers.launchpad.net/yade/+question/689337
Status: Open => Needs information
Robert Caulk requested more information:
I need your cmake output to help you more, but I assume you don't have
libQt5 installed.
Please review [1] if you seek
Question #689337 on Yade changed:
https://answers.launchpad.net/yade/+question/689337
Status: Open => Answered
Robert Caulk proposed the following answer:
>>Is there a way to install yade on centos, and if so, is there a
tutorial?
[1]https://answers.launchpad.net/yade/+questi
Question #65 on Yade changed:
https://answers.launchpad.net/yade/+question/65
Robert Caulk posted a new comment:
Would love to see your final solution posted to this thread for future
users ;-)
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Question #689256 on Yade changed:
https://answers.launchpad.net/yade/+question/689256
Robert Caulk posted a new comment:
Adding link for completeness.
[1]https://yade-dem.org/doc/yade.utils.html#yade._utils.getStressProfile
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Question #689196 on Yade changed:
https://answers.launchpad.net/yade/+question/689196
Status: Open => Answered
Robert Caulk proposed the following answer:
[1]https://answers.launchpad.net/yade/+question/675926
[2]https://yade-dem.org/doc/yade.utils.html?highlight=utils.psd#yade.utils.
Question #689186 on Yade changed:
https://answers.launchpad.net/yade/+question/689186
Status: Open => Answered
Robert Caulk proposed the following answer:
Does:
if O.realtime>someValue: sys.exit(0)
work?
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Question #689117 on Yade changed:
https://answers.launchpad.net/yade/+question/689117
Status: Open => Answered
Robert Caulk proposed the following answer:
Try setting
flow.meshUpdateInterval=-1
flow.defTolerance=-1
to avoid remeshing.
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Question #689131 on Yade changed:
https://answers.launchpad.net/yade/+question/689131
Status: Open => Answered
Robert Caulk proposed the following answer:
Please use yade.timing module and provide yade.timing.stats [1]
[1]https://gitlab.com/yade-
dev/trunk/-/blob/master/examp
Question #689131 on Yade changed:
https://answers.launchpad.net/yade/+question/689131
Status: Open => Answered
Robert Caulk proposed the following answer:
-It is possible there are two few spheres to take advantage of parallel
computing.
-It is possible you have an expensive PyRun
Question #689131 on Yade changed:
https://answers.launchpad.net/yade/+question/689131
Status: Open => Answered
Robert Caulk proposed the following answer:
Hello,
It depends on the script you are running.
Cheers,
Robert
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Question #689117 on Yade changed:
https://answers.launchpad.net/yade/+question/689117
Status: Open => Answered
Robert Caulk proposed the following answer:
>The problem is that the box corners affects the flow results.
Please elaborate on how the flow results are affected.
>Howev
Question #689058 on Yade changed:
https://answers.launchpad.net/yade/+question/689058
Robert Caulk posted a new comment:
I once added rolling/twisting resistance to JCFpm. It was not too
difficult: just add all the necessary members/if statements as shown in
cohesivefrictional. But in the end, it
Question #688994 on Yade changed:
https://answers.launchpad.net/yade/+question/688994
Status: Open => Answered
Robert Caulk proposed the following answer:
I'm having Déjà Vu. Fluid flow is not considered in yade unless a
separate engine is included [1].
[1]https://answers.launchpad.
Question #688979 on Yade changed:
https://answers.launchpad.net/yade/+question/688979
Status: Open => Answered
Robert Caulk proposed the following answer:
Fluid coupling is not simulated in Yade unless you add a separate engine
designed to do so [1].
[1]http://people.3sr-
grenoble.fr/us
Question #688685 on Yade changed:
https://answers.launchpad.net/yade/+question/688685
Robert Caulk proposed the following answer:
>>Thanks for creating this tool. Just to clarify, "sweep over" means
that I will need to write a for loop to extract the cell velocity at a
bounded c
Question #688906 on Yade changed:
https://answers.launchpad.net/yade/+question/688906
Robert Caulk posted a new comment:
It is also worth checking the stderr (assuming the cluster is generating
one).
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Question #688685 on Yade changed:
https://answers.launchpad.net/yade/+question/688685
Robert Caulk proposed the following answer:
>>You could filter out external elements and use local velocity to
extract flux in the core. That's not straightforward but it could
probably be done (ei
Question #65 on Yade changed:
https://answers.launchpad.net/yade/+question/65
Robert Caulk posted a new comment:
Good to know, Jan ;-)
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Question #65 on Yade changed:
https://answers.launchpad.net/yade/+question/65
Status: Open => Answered
Robert Caulk proposed the following answer:
I guess you could keep a list of non-cohesive interaction IDs. Get a new
list of non-cohesive interaction ids at each time step
Question #62 on Yade changed:
https://answers.launchpad.net/yade/+question/62
Status: Open => Answered
Robert Caulk proposed the following answer:
>>Does it mean that use only one core (or thread)?
Yes.
>>could you please give me suggestion on the choice of or
&g
Question #62 on Yade changed:
https://answers.launchpad.net/yade/+question/62
Robert Caulk proposed the following answer:
>>Does it mean that use only one core (or thread)?
Are you familiar with the command "htop" in linux? It allows you to
monitor your cpu activity.
Question #688867 on Yade changed:
https://answers.launchpad.net/yade/+question/688867
Status: Open => Answered
Robert Caulk proposed the following answer:
O.bodies[b].state.inertia
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Question #688867 on Yade changed:
https://answers.launchpad.net/yade/+question/688867
Status: Open => Answered
Robert Caulk proposed the following answer:
>> roddd =
O.bodies.append(ymport.stl(mesh+'.stl',wire=True,material='wall'))
This command sets roddd as
Question #688771 on Yade changed:
https://answers.launchpad.net/yade/+question/688771
Status: Open => Answered
Robert Caulk proposed the following answer:
Bruno will know for sure, but it seems possible that the sorting is
unable to use parallelization because a bound moves outside o
Question #688685 on Yade changed:
https://answers.launchpad.net/yade/+question/688685
Status: Open => Answered
Robert Caulk proposed the following answer:
>Do you think that having a box (6 walls) surrounding a cylindrical
sphere packing will give different results than if the cylin
Question #688826 on Yade changed:
https://answers.launchpad.net/yade/+question/688826
Status: Open => Answered
Robert Caulk proposed the following answer:
Hello,
It is possible [1], but requires a relatively good handle on the
compilation and linking of third party libraries in linux
Question #688822 on Yade changed:
https://answers.launchpad.net/yade/+question/688822
Status: Open => Answered
Robert Caulk proposed the following answer:
gmsh is one option [1]
[1]http://gmsh.info/
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Question #688345 on Yade changed:
https://answers.launchpad.net/yade/+question/688345
Robert Caulk posted a new comment:
To add to Jèrôme: isCohesive=False means there can be frictional
contact, but not cohesive contact. The only time a bond will truly
disappear is if the particles are not
Question #688791 on Yade changed:
https://answers.launchpad.net/yade/+question/688791
Robert Caulk requested more information:
[1]https://www.yade-dem.org/wiki/Howtoask
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Question #688791 on Yade changed:
https://answers.launchpad.net/yade/+question/688791
Status: Open => Needs information
Robert Caulk requested more information:
Unable to locate MWE.py :-)
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Question #688771 on Yade changed:
https://answers.launchpad.net/yade/+question/688771
Status: Open => Answered
Robert Caulk proposed the following answer:
If this is the warning(?):
"The number of bodies is probably too small for allowing more threads,
or the geometry is flat. The
Question #688685 on Yade changed:
https://answers.launchpad.net/yade/+question/688685
Status: Open => Answered
Robert Caulk proposed the following answer:
Your order of operations is still incorrect. Here I will describe what
you posted in english:
1) You set your engine list with flow.d
Question #688771 on Yade changed:
https://answers.launchpad.net/yade/+question/688771
Status: Open => Needs information
Robert Caulk requested more information:
>>Yes, you are right, when I used 500 particles in the same code, I can sun it
>>in parallel.
What should I do now?
Question #688763 on Yade changed:
https://answers.launchpad.net/yade/+question/688763
Robert Caulk posted a new comment:
[1]https://www.yade-dem.org/wiki/Howtoask
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Question #688763 on Yade changed:
https://answers.launchpad.net/yade/+question/688763
Status: Open => Answered
Robert Caulk proposed the following answer:
Hello,
I am happy to help you with your new problem. In the future please post
new questions into new threads, as we request in [1
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