Hello,
I'm currently trying to use a GaussianProcessClassification with the
WeightedDegreeStringKernel but unfortunately I get the error message
"*** glibc detected *** python: free(): invalid pointer:
0x000000325ff906a8 ***" whenever I try to train the GaussianProcess.
Using a SVM with the WeightedDegreeStringKernel or a GP with the
GaussianKernel works totally fine though.
Could you maybe take a look at the error message?
Thank you and best regards,
Benjamin
*** glibc detected *** python: free(): invalid pointer: 0x000000325ff8fed8 ***
======= Backtrace: =========
/lib64/libc.so.6[0x325fc75e66]
/nfs/wsi/home/sailer/shogun-nlopt/lib/libshogun.so.17(_ZN6shogun10TParameter10copy_stypeENS_11EStructTypeENS_14EPrimitiveTypeEPvS3_+0x17a)[0x7f3d4fd66e1a]
/nfs/wsi/home/sailer/shogun-nlopt/lib/libshogun.so.17(_ZN6shogun10TParameter4copyEPS0_+0x45b)[0x7f3d4fd6772b]
/nfs/wsi/home/sailer/shogun-nlopt/lib/libshogun.so.17(_ZN6shogun9CSGObject5cloneEv+0x80)[0x7f3d4fd61d20]
/nfs/wsi/home/sailer/shogun-nlopt/lib/libshogun.so.17(_ZN6shogun10TParameter10copy_ptypeENS_14EPrimitiveTypeEPvS2_+0xce)[0x7f3d4fd6680e]
/nfs/wsi/home/sailer/shogun-nlopt/lib/libshogun.so.17(_ZN6shogun10TParameter4copyEPS0_+0x4c1)[0x7f3d4fd67791]
/nfs/wsi/home/sailer/shogun-nlopt/lib/libshogun.so.17(_ZN6shogun9CSGObject5cloneEv+0x80)[0x7f3d4fd61d20]
/nfs/wsi/home/sailer/shogun-nlopt/lib/libshogun.so.17(_ZN6shogun23CGaussianProcessMachine19get_posterior_meansEPNS_9CFeaturesE+0x6d)[0x7f3d4ff6a4ed]
/nfs/wsi/home/sailer/shogun-nlopt/lib/libshogun.so.17(_ZN6shogun30CGaussianProcessClassification15get_mean_vectorEPNS_9CFeaturesE+0x8c)[0x7f3d4fe1437c]
/nfs/wsi/home/sailer/shogun-nlopt/lib/libshogun.so.17(_ZN6shogun30CGaussianProcessClassification12apply_binaryEPNS_9CFeaturesE+0x86)[0x7f3d4fe145d6]
/nfs/wsi/home/sailer/shogun-nlopt/lib/python2.7/site-packages/_modshogun.so(+0x25c0e5)[0x7f3d50bca0e5]
/nfs/wsi/home/sailer/shogun-nlopt/lib/python2.7/site-packages/_modshogun.so(+0x9199cb)[0x7f3d512879cb]
/nfs/wsi/home/sailer/shogun-nlopt/lib/python2.7/site-packages/_modshogun.so(+0x919fc6)[0x7f3d51287fc6]
/nfs/wsi/home/sailer/software/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x5a40)[0x7f3d58867c30]
/nfs/wsi/home/sailer/software/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x5eeb)[0x7f3d588680db]
/nfs/wsi/home/sailer/software/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x5eeb)[0x7f3d588680db]
/nfs/wsi/home/sailer/software/lib/libpython2.7.so.1.0(PyEval_EvalCodeEx+0x88e)[0x7f3d5886974e]
/nfs/wsi/home/sailer/software/lib/libpython2.7.so.1.0(PyEval_EvalCode+0x32)[0x7f3d58869862]
/nfs/wsi/home/sailer/software/lib/libpython2.7.so.1.0(PyRun_FileExFlags+0xb0)[0x7f3d588896d0]
/nfs/wsi/home/sailer/software/lib/libpython2.7.so.1.0(PyRun_SimpleFileExFlags+0xef)[0x7f3d588898af]
/nfs/wsi/home/sailer/software/lib/libpython2.7.so.1.0(Py_Main+0xc74)[0x7f3d5889f1c4]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x325fc1ed5d]
python[0x400649]
======= Memory map: ========
00400000-00401000 r-xp 00000000 00:6b 68291 /nfs/wsi/home/sailer/software/bin/python2.7
00600000-00601000 rw-p 00000000 00:6b 68291 /nfs/wsi/home/sailer/software/bin/python2.7
00872000-014ff000 rw-p 00000000 00:00 0 [heap]
30ee000000-30ee1b9000 r-xp 00000000 fd:00 155365 /usr/lib64/libcrypto.so.1.0.1e
30ee1b9000-30ee3b8000 ---p 001b9000 fd:00 155365 /usr/lib64/libcrypto.so.1.0.1e
30ee3b8000-30ee3d3000 r--p 001b8000 fd:00 155365 /usr/lib64/libcrypto.so.1.0.1e
30ee3d3000-30ee3df000 rw-p 001d3000 fd:00 155365 /usr/lib64/libcrypto.so.1.0.1e
30ee3df000-30ee3e3000 rw-p 00000000 00:00 0
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30ee661000-30ee665000 r--p 00061000 fd:00 168922 /usr/lib64/libssl.so.1.0.1e
30ee665000-30ee66c000 rw-p 00065000 fd:00 168922 /usr/lib64/libssl.so.1.0.1e
30ee800000-30ee827000 r-xp 00000000 fd:00 158537 /usr/lib64/libssh2.so.1.0.1
30ee827000-30eea26000 ---p 00027000 fd:00 158537 /usr/lib64/libssh2.so.1.0.1
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30eea27000-30eea28000 rw-p 00000000 00:00 0
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30ef052000-30ef252000 ---p 00052000 fd:00 135264 /usr/lib64/libcurl.so.4.1.1
30ef252000-30ef255000 rw-p 00052000 fd:00 135264 /usr/lib64/libcurl.so.4.1.1
325f800000-325f820000 r-xp 00000000 fd:00 1831471 /lib64/ld-2.12.so
325fa1f000-325fa20000 r--p 0001f000 fd:00 1831471 /lib64/ld-2.12.so
325fa20000-325fa21000 rw-p 00020000 fd:00 1831471 /lib64/ld-2.12.so
325fa21000-325fa22000 rw-p 00000000 00:00 0
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325ff8a000-325ff8e000 r--p 0018a000 fd:00 1831648 /lib64/libc-2.12.so
325ff8e000-325ff8f000 rw-p 0018e000 fd:00 1831648 /lib64/libc-2.12.so
325ff8f000-325ff94000 rw-p 00000000 00:00 0
3260000000-3260017000 r-xp 00000000 fd:00 1831807 /lib64/libpthread-2.12.so
3260017000-3260217000 ---p 00017000 fd:00 1831807 /lib64/libpthread-2.12.so
3260217000-3260218000 r--p 00017000 fd:00 1831807 /lib64/libpthread-2.12.so
3260218000-3260219000 rw-p 00018000 fd:00 1831807 /lib64/libpthread-2.12.so
3260219000-326021d000 rw-p 00000000 00:00 0
3260400000-3260483000 r-xp 00000000 fd:00 1831649 /lib64/libm-2.12.so
3260483000-3260682000 ---p 00083000 fd:00 1831649 /lib64/libm-2.12.so
3260682000-3260683000 r--p 00082000 fd:00 1831649 /lib64/libm-2.12.so
3260683000-3260684000 rw-p 00083000 fd:00 1831649 /lib64/libm-2.12.so
3260800000-3260802000 r-xp 00000000 fd:00 1831808 /lib64/libdl-2.12.so
3260802000-3260a02000 ---p 00002000 fd:00 1831808 /lib64/libdl-2.12.so
3260a02000-3260a03000 r--p 00002000 fd:00 1831808 /lib64/libdl-2.12.so
3260a03000-3260a04000 rw-p 00003000 fd:00 1831808 /lib64/libdl-2.12.so
3260c00000-3260c15000 r-xp 00000000 fd:00 1831650 /lib64/libz.so.1.2.3
3260c15000-3260e14000 ---p 00015000 fd:00 1831650 /lib64/libz.so.1.2.3
3260e14000-3260e15000 r--p 00014000 fd:00 1831650 /lib64/libz.so.1.2.3
3260e15000-3260e16000 rw-p 00015000 fd:00 1831650 /lib64/libz.so.1.2.3
3261000000-3261007000 r-xp 00000000 fd:00 1831853 /lib64/librt-2.12.so
3261007000-3261206000 ---p 00007000 fd:00 1831853 /lib64/librt-2.12.so
3261206000-3261207000 r--p 00006000 fd:00 1831853 /lib64/librt-2.12.so
3261207000-3261208000 rw-p 00007000 fd:00 1831853 /lib64/librt-2.12.so
3261800000-3261816000 r-xp 00000000 fd:00 1831849 /lib64/libresolv-2.12.so
3261816000-3261a16000 ---p 00016000 fd:00 1831849 /lib64/libresolv-2.12.so
3261a16000-3261a17000 r--p 00016000 fd:00 1831849 /lib64/libresolv-2.12.so
3261a17000-3261a18000 rw-p 00017000 fd:00 1831849 /lib64/libresolv-2.12.so
3261a18000-3261a1a000 rw-p 00000000 00:00 0
3261c00000-3261c1d000 r-xp 00000000 fd:00 1831859 /lib64/libselinux.so.1
3261c1d000-3261e1c000 ---p 0001d000 fd:00 1831859 /lib64/libselinux.so.1
3261e1c000-3261e1d000 r--p 0001c000 fd:00 1831859 /lib64/libselinux.so.1
3261e1d000-3261e1e000 rw-p 0001d000 fd:00 1831859 /lib64/libselinux.so.1
3261e1e000-3261e1f000 rw-p 00000000 00:00 0
3266000000-326600d000 r-xp 00000000 fd:00 133416 /usr/lib64/libgomp.so.1.0.0
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326620c000-326620d000 rw-p 0000c000 fd:00 133416 /usr/lib64/libgomp.so.1.0.0
3266400000-3266416000 r-xp 00000000 fd:00 1831797 /lib64/libgcc_s-4.4.7-20120601.so.1
3266416000-3266615000 ---p 00016000 fd:00 1831797 /lib64/libgcc_s-4.4.7-20120601.so.1
3266615000-3266616000 rw-p 00015000 fd:00 1831797 /lib64/libgcc_s-4.4.7-20120601.so.1
3267400000-3267403000 r-xp 00000000 fd:00 1831878 /lib64/libcom_err.so.2.1
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3267602000-3267603000 r--p 00002000 fd:00 1831878 /lib64/libcom_err.so.2.1
3267603000-3267604000 rw-p 00003000 fd:00 1831878 /lib64/libcom_err.so.2.1
3267800000-3267802000 r-xp 00000000 fd:00 1831862 /lib64/libkeyutils.so.1.3
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3267a01000-3267a02000 r--p 00001000 fd:00 1831862 /lib64/libkeyutils.so.1.3
3267a02000-3267a03000 rw-p 00002000 fd:00 1831862 /lib64/libkeyutils.so.1.3
3267c00000-3267c0a000 r-xp 00000000 fd:00 1831863 /lib64/libkrb5support.so.0.1
3267c0a000-3267e09000 ---p 0000a000 fd:00 1831863 /lib64/libkrb5support.so.0.1
3267e09000-3267e0a000 r--p 00009000 fd:00 1831863 /lib64/libkrb5support.so.0.1
3267e0a000-3267e0b000 rw-p 0000a000 fd:00 1831863 /lib64/libkrb5support.so.0.1
3268000000-3268029000 r-xp 00000000 fd:00 1831875 /lib64/libk5crypto.so.3.1
3268029000-3268229000 ---p 00029000 fd:00 1831875 /lib64/libk5crypto.so.3.1
3268229000-326822a000 r--p 00029000 fd:00 1831875 /lib64/libk5crypto.so.3.1
326822a000-326822b000 rw-p 0002a000 fd:00 1831875 /lib64/libk5crypto.so.3.1
326822b000-326822c000 rw-p 00000000 00:00 0
3268400000-32684db000 r-xp 00000000 fd:00 1831879 /lib64/libkrb5.so.3.3
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7f3d4a54b000-7f3d4a64d000 rw-p 00000000 00:00 0
7f3d4a685000-7f3d4a785000 rw-p 00000000 00:00 0
7f3d4a785000-7f3d4a7e3000 r-xp 00000000 00:6b 109747 /nfs/wsi/home/sailer/shogun-nlopt/lib/python2.7/site-packages/numpy/random/mtrand.so
7f3d4a7e3000-7f3d4a9e3000 ---p 0005e000 00:6b 109747 /nfs/wsi/home/sailer/shogun-nlopt/lib/python2.7/site-packages/numpy/random/mtrand.so
7f3d4a9e3000-7f3d4aa1c000 rw-p 0005e000 00:6b 109747 /nfs/wsi/home/sailer/shogun-nlopt/lib/python2.7/site-packages/numpy/random/mtrand.so
7f3d4aa1c000-7f3d4aa5d000 rw-p 00000000 00:00 0
7f3d4aa5d000-7f3d4aa66000 r-xp 00000000 00:6b 109395 /nfs/wsi/home/sailer/shogun-nlopt/lib/python2.7/site-packages/numpy/fft/fftpack_lite.so
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ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
Aborted
