Have you tried running on only 2 cores? But, yes, I have now checked your arch.make. You should rely on only one or the other integer precision, lp64 or ilp64.
Change: SCALAPACK_LIBS=/opt/intel/mkl/10.0.1.014/lib/em64t/libmkl_scalapack_ilp64.a to SCALAPACK_LIBS=/opt/intel/mkl/10.0.1.014/lib/em64t/libmkl_scalapack_lp64.a I am not too familiar with that old version of intel, if you have the possibility to update to a later version I would highly advise you to do so. 2014-08-25 12:57 GMT+02:00 <[email protected]>: > Thank you for the reply. > I tried with less number of cores also. But the error is persistent. I am > new to siesta. So have no idea if I need to give any parameters for > parallel run in fdf file. > Also if it is mistake of compilation, where I might be going wrong. > > M Dave > Research Student > The M S University of Baroda. Gujarat. > India > *From: *Nick Papior Andersen > *Sent: *Monday 25 August 2014 16:22 > *To: *[email protected] > *Reply To: *[email protected] > *Subject: *Re: [SIESTA-L] error: forrtl: severe (174): SIGSEGV, > segmentation fault > > First try and reduce number of cores, one Fe atom with 8 cores is maybe a > bit too much... > > > 2014-08-25 12:36 GMT+02:00 <[email protected]>: > >> >> >> Original Message >> >> Dear Siesta User, >> >> I am trying to run parallel siesta using lam-mpi on 8 nodes. >> I could compile in Obj directory,but on running the program for >> example Fe of the package,i am getting this error. >> >> outcell: Cell vector modules (Ang) : 2.485493 2.485493 2.485493 >> outcell: Cell angles (23,13,12) (deg): 109.4712 70.5288 70.5288 >> outcell: Cell volume (Ang**3) : 11.8200 >> New_DM. Step: 1 >> Initializing Density Matrix... >> >> initdm: Initial spin polarization (Qup-Qdown) = 4.000000 >> >> InitMesh: MESH = 16 x 16 x 16 = 4096 >> InitMesh: Mesh cutoff (required, used) = 150.000 171.794 Ry >> >> * Maximum dynamic memory allocated = 7 MB >> forrtl: severe (174): SIGSEGV, segmentation fault occurred >> Image PC Routine Line >> Source >> siesta 0000000000837F53 Unknown Unknown Unknown >> siesta 00000000007A1945 Unknown Unknown Unknown >> siesta 000000000079E718 Unknown Unknown Unknown >> siesta 00000000004C7FCF Unknown Unknown Unknown >> siesta 0000000000442972 Unknown Unknown Unknown >> siesta 0000000000433DAD Unknown Unknown Unknown >> siesta 00000000004FD92C Unknown Unknown Unknown >> siesta 0000000000521083 Unknown Unknown Unknown >> siesta 00000000005211F7 Unknown Unknown Unknown >> siesta 0000000000407462 Unknown Unknown Unknown >> libc.so.6 000000329181D8A4 Unknown Unknown Unknown >> siesta 00000000004073A9 Unknown Unknown Unknown >> forrtl: severe (174): SIGSEGV, segmentation fault occurred >> Image PC Routine Line >> Source >> siesta 0000000000837F53 Unknown Unknown Unknown >> siesta 00000000007A1945 Unknown Unknown Unknown >> siesta 000000000079E718 Unknown Unknown Unknown >> siesta 00000000004C7FCF Unknown Unknown Unknown >> siesta 0000000000442972 Unknown Unknown Unknown >> siesta 0000000000433DAD Unknown Unknown Unknown >> siesta 00000000004FD92C Unknown Unknown Unknown >> siesta 0000000000521083 Unknown Unknown Unknown >> siesta 00000000005211F7 Unknown Unknown Unknown >> siesta 0000000000407462 Unknown Unknown Unknown >> libc.so.6 000000329181D8A4 Unknown Unknown Unknown >> siesta 00000000004073A9 Unknown Unknown Unknown >> forrtl: severe (174): SIGSEGV, segmentation fault occurred >> Image PC Routine Line >> Source >> siesta 0000000000837F53 Unknown Unknown Unknown >> siesta 00000000007A1945 Unknown Unknown Unknown >> siesta 000000000079E718 Unknown Unknown Unknown >> siesta 00000000004C7FCF Unknown Unknown Unknown >> siesta 0000000000442972 Unknown Unknown Unknown >> siesta 0000000000433DAD Unknown Unknown Unknown >> siesta 00000000004FD92C Unknown Unknown Unknown >> siesta 0000000000521083 Unknown Unknown Unknown >> siesta 00000000005211F7 Unknown Unknown Unknown >> siesta 0000000000407462 Unknown Unknown Unknown >> libc.so.6 000000329181D8A4 Unknown Unknown Unknown >> siesta 00000000004073A9 Unknown Unknown Unknown >> forrtl: severe (174): SIGSEGV, segmentation fault occurred >> Image PC Routine Line >> Source >> siesta 0000000000837F53 Unknown Unknown Unknown >> siesta 00000000007A1945 Unknown Unknown Unknown >> siesta 000000000079E718 Unknown Unknown Unknown >> siesta 00000000004C7FCF Unknown Unknown Unknown >> siesta 0000000000442972 Unknown Unknown Unknown >> siesta 0000000000433DAD Unknown Unknown Unknown >> siesta 00000000004FD92C Unknown Unknown Unknown >> siesta 0000000000521083 Unknown Unknown Unknown >> siesta 00000000005211F7 Unknown Unknown Unknown >> siesta 0000000000407462 Unknown Unknown Unknown >> libc.so.6 000000329181D8A4 Unknown Unknown Unknown >> siesta 00000000004073A9 Unknown Unknown Unknown >> forrtl: severe (174): SIGSEGV, segmentation fault occurred >> Image PC Routine Line >> Source >> siesta 0000000000837F53 Unknown Unknown Unknown >> siesta 00000000007A1945 Unknown Unknown Unknown >> siesta 000000000079E718 Unknown Unknown Unknown >> siesta 00000000004C7FCF Unknown Unknown Unknown >> siesta 0000000000442972 Unknown Unknown Unknown >> siesta 0000000000433DAD Unknown Unknown Unknown >> siesta 00000000004FD92C Unknown Unknown Unknown >> siesta 0000000000521083 Unknown Unknown Unknown >> siesta 00000000005211F7 Unknown Unknown Unknown >> siesta 0000000000407462 Unknown Unknown Unknown >> libc.so.6 000000329181D8A4 Unknown Unknown Unknown >> siesta 00000000004073A9 Unknown Unknown Unknown >> forrtl: severe (174): SIGSEGV, segmentation fault occurred >> Image PC Routine Line >> Source >> siesta 0000000000837F53 Unknown Unknown Unknown >> siesta 00000000007A1945 Unknown Unknown Unknown >> siesta 000000000079E718 Unknown Unknown Unknown >> siesta 00000000004C7FCF Unknown Unknown Unknown >> siesta 0000000000442972 Unknown Unknown Unknown >> siesta 0000000000433DAD Unknown Unknown Unknown >> siesta 00000000004FD92C Unknown Unknown Unknown >> siesta 0000000000521083 Unknown Unknown Unknown >> siesta 00000000005211F7 Unknown Unknown Unknown >> siesta 0000000000407462 Unknown Unknown Unknown >> libc.so.6 000000329181D8A4 Unknown Unknown Unknown >> siesta 00000000004073A9 Unknown Unknown Unknown >> forrtl: severe (174): SIGSEGV, segmentation fault occurred >> Image PC Routine Line >> Source >> siesta 0000000000837F53 Unknown Unknown Unknown >> siesta 00000000007A1945 Unknown Unknown Unknown >> siesta 000000000079E718 Unknown Unknown Unknown >> siesta 00000000004C7FCF Unknown Unknown Unknown >> siesta 0000000000442972 Unknown Unknown Unknown >> siesta 0000000000433DAD Unknown Unknown Unknown >> siesta 00000000004FD92C Unknown Unknown Unknown >> siesta 0000000000521083 Unknown Unknown Unknown >> siesta 00000000005211F7 Unknown Unknown Unknown >> siesta 0000000000407462 Unknown Unknown Unknown >> libc.so.6 000000329181D8A4 Unknown Unknown Unknown >> siesta 00000000004073A9 Unknown Unknown Unknown >> forrtl: severe (174): SIGSEGV, segmentation fault occurred >> Image PC Routine Line >> Source >> siesta 0000000000837F53 Unknown Unknown Unknown >> siesta 00000000007A1945 Unknown Unknown Unknown >> siesta 000000000079E718 Unknown Unknown Unknown >> siesta 00000000004C7FCF Unknown Unknown Unknown >> siesta 0000000000442972 Unknown Unknown Unknown >> siesta 0000000000433DAD Unknown Unknown Unknown >> siesta 00000000004FD92C Unknown Unknown Unknown >> siesta 0000000000521083 Unknown Unknown Unknown >> siesta 00000000005211F7 Unknown Unknown Unknown >> siesta 0000000000407462 Unknown Unknown Unknown >> libc.so.6 000000329181D8A4 Unknown Unknown Unknown >> siesta 00000000004073A9 Unknown Unknown Unknown >> >> ----------------------------------------------------------------------------- >> One of the processes started by mpirun has exited with a nonzero exit >> code. This typically indicates that the process finished in error. >> If your process did not finish in error, be sure to include a "return >> 0" or "exit(0)" in your C code before exiting the application. >> >> PID 19071 failed on node n0 (127.0.0.1) with exit status 174. >> >> ----------------------------------------------------------------------------- >> >> I attach here the arch.make file. >> >> PLease guide for this error. >> > > > > -- > Kind regards Nick > > -- Kind regards Nick
