Well you could try a bit larger system, yet I think you may need to adapt your arch.make file. You could also check that linking has been done correctly (in case you are not linking statically), you can do: ldd siesta and check the libraries are correct.
I cannot assist you anymore as the compiler you are using is "very" old. Contact your system administrator or try installing with gnu/openblas/scalapack/netcdf. 2014-08-26 10:51 GMT+02:00 <[email protected]>: > > Even after applying the change of BLACS and SCALAPACK as you > mentioned,the compilation finishes successfully bt the program doesn't > execute with 2 cores also. Though it works for 1 core. i.e.serial with MPI. > Is it that for parallel job we need some amount of bigger system? Can that > be the reason for this error? What may be wrong in compilation? > > Thanks, > > M Dave > *From: *Nick Papior Andersen > *Sent: *Monday 25 August 2014 16:37 > *To: *[email protected] > *Reply To: *[email protected] > *Subject: *Re: [SIESTA-L] error: forrtl: severe (174): SIGSEGV, > segmentation fault > > Have you tried running on only 2 cores? > But, yes, I have now checked your arch.make. You should rely on only one > or the other integer precision, lp64 or ilp64. > > Change: > SCALAPACK_LIBS=/opt/intel/mkl/ > 10.0.1.014/lib/em64t/libmkl_scalapack_ilp64.a > to > SCALAPACK_LIBS=/opt/intel/mkl/10.0.1.014/lib/em64t/libmkl_scalapack_lp64.a > > I am not too familiar with that old version of intel, if you have the > possibility to update to a later version I would highly advise you to do so. > > > 2014-08-25 12:57 GMT+02:00 <[email protected]>: > >> Thank you for the reply. >> I tried with less number of cores also. But the error is persistent. I am >> new to siesta. So have no idea if I need to give any parameters for >> parallel run in fdf file. >> Also if it is mistake of compilation, where I might be going wrong. >> >> M Dave >> Research Student >> The M S University of Baroda. Gujarat. >> India >> *From: *Nick Papior Andersen >> *Sent: *Monday 25 August 2014 16:22 >> *To: *[email protected] >> *Reply To: *[email protected] >> *Subject: *Re: [SIESTA-L] error: forrtl: severe (174): SIGSEGV, >> segmentation fault >> >> First try and reduce number of cores, one Fe atom with 8 cores is maybe a >> bit too much... >> >> >> 2014-08-25 12:36 GMT+02:00 <[email protected]>: >> >>> >>> >>> Original Message >>> >>> Dear Siesta User, >>> >>> I am trying to run parallel siesta using lam-mpi on 8 nodes. >>> I could compile in Obj directory,but on running the program for >>> example Fe of the package,i am getting this error. >>> >>> outcell: Cell vector modules (Ang) : 2.485493 2.485493 2.485493 >>> outcell: Cell angles (23,13,12) (deg): 109.4712 70.5288 70.5288 >>> outcell: Cell volume (Ang**3) : 11.8200 >>> New_DM. Step: 1 >>> Initializing Density Matrix... >>> >>> initdm: Initial spin polarization (Qup-Qdown) = 4.000000 >>> >>> InitMesh: MESH = 16 x 16 x 16 = 4096 >>> InitMesh: Mesh cutoff (required, used) = 150.000 171.794 Ry >>> >>> * Maximum dynamic memory allocated = 7 MB >>> forrtl: severe (174): SIGSEGV, segmentation fault occurred >>> Image PC Routine Line >>> Source >>> siesta 0000000000837F53 Unknown Unknown Unknown >>> siesta 00000000007A1945 Unknown Unknown Unknown >>> siesta 000000000079E718 Unknown Unknown Unknown >>> siesta 00000000004C7FCF Unknown Unknown Unknown >>> siesta 0000000000442972 Unknown Unknown Unknown >>> siesta 0000000000433DAD Unknown Unknown Unknown >>> siesta 00000000004FD92C Unknown Unknown Unknown >>> siesta 0000000000521083 Unknown Unknown Unknown >>> siesta 00000000005211F7 Unknown Unknown Unknown >>> siesta 0000000000407462 Unknown Unknown Unknown >>> libc.so.6 000000329181D8A4 Unknown Unknown Unknown >>> siesta 00000000004073A9 Unknown Unknown Unknown >>> forrtl: severe (174): SIGSEGV, segmentation fault occurred >>> Image PC Routine Line >>> Source >>> siesta 0000000000837F53 Unknown Unknown Unknown >>> siesta 00000000007A1945 Unknown Unknown Unknown >>> siesta 000000000079E718 Unknown Unknown Unknown >>> siesta 00000000004C7FCF Unknown Unknown Unknown >>> siesta 0000000000442972 Unknown Unknown Unknown >>> siesta 0000000000433DAD Unknown Unknown Unknown >>> siesta 00000000004FD92C Unknown Unknown Unknown >>> siesta 0000000000521083 Unknown Unknown Unknown >>> siesta 00000000005211F7 Unknown Unknown Unknown >>> siesta 0000000000407462 Unknown Unknown Unknown >>> libc.so.6 000000329181D8A4 Unknown Unknown Unknown >>> siesta 00000000004073A9 Unknown Unknown Unknown >>> forrtl: severe (174): SIGSEGV, segmentation fault occurred >>> Image PC Routine Line >>> Source >>> siesta 0000000000837F53 Unknown Unknown Unknown >>> siesta 00000000007A1945 Unknown Unknown Unknown >>> siesta 000000000079E718 Unknown Unknown Unknown >>> siesta 00000000004C7FCF Unknown Unknown Unknown >>> siesta 0000000000442972 Unknown Unknown Unknown >>> siesta 0000000000433DAD Unknown Unknown Unknown >>> siesta 00000000004FD92C Unknown Unknown Unknown >>> siesta 0000000000521083 Unknown Unknown Unknown >>> siesta 00000000005211F7 Unknown Unknown Unknown >>> siesta 0000000000407462 Unknown Unknown Unknown >>> libc.so.6 000000329181D8A4 Unknown Unknown Unknown >>> siesta 00000000004073A9 Unknown Unknown Unknown >>> forrtl: severe (174): SIGSEGV, segmentation fault occurred >>> Image PC Routine Line >>> Source >>> siesta 0000000000837F53 Unknown Unknown Unknown >>> siesta 00000000007A1945 Unknown Unknown Unknown >>> siesta 000000000079E718 Unknown Unknown Unknown >>> siesta 00000000004C7FCF Unknown Unknown Unknown >>> siesta 0000000000442972 Unknown Unknown Unknown >>> siesta 0000000000433DAD Unknown Unknown Unknown >>> siesta 00000000004FD92C Unknown Unknown Unknown >>> siesta 0000000000521083 Unknown Unknown Unknown >>> siesta 00000000005211F7 Unknown Unknown Unknown >>> siesta 0000000000407462 Unknown Unknown Unknown >>> libc.so.6 000000329181D8A4 Unknown Unknown Unknown >>> siesta 00000000004073A9 Unknown Unknown Unknown >>> forrtl: severe (174): SIGSEGV, segmentation fault occurred >>> Image PC Routine Line >>> Source >>> siesta 0000000000837F53 Unknown Unknown Unknown >>> siesta 00000000007A1945 Unknown Unknown Unknown >>> siesta 000000000079E718 Unknown Unknown Unknown >>> siesta 00000000004C7FCF Unknown Unknown Unknown >>> siesta 0000000000442972 Unknown Unknown Unknown >>> siesta 0000000000433DAD Unknown Unknown Unknown >>> siesta 00000000004FD92C Unknown Unknown Unknown >>> siesta 0000000000521083 Unknown Unknown Unknown >>> siesta 00000000005211F7 Unknown Unknown Unknown >>> siesta 0000000000407462 Unknown Unknown Unknown >>> libc.so.6 000000329181D8A4 Unknown Unknown Unknown >>> siesta 00000000004073A9 Unknown Unknown Unknown >>> forrtl: severe (174): SIGSEGV, segmentation fault occurred >>> Image PC Routine Line >>> Source >>> siesta 0000000000837F53 Unknown Unknown Unknown >>> siesta 00000000007A1945 Unknown Unknown Unknown >>> siesta 000000000079E718 Unknown Unknown Unknown >>> siesta 00000000004C7FCF Unknown Unknown Unknown >>> siesta 0000000000442972 Unknown Unknown Unknown >>> siesta 0000000000433DAD Unknown Unknown Unknown >>> siesta 00000000004FD92C Unknown Unknown Unknown >>> siesta 0000000000521083 Unknown Unknown Unknown >>> siesta 00000000005211F7 Unknown Unknown Unknown >>> siesta 0000000000407462 Unknown Unknown Unknown >>> libc.so.6 000000329181D8A4 Unknown Unknown Unknown >>> siesta 00000000004073A9 Unknown Unknown Unknown >>> forrtl: severe (174): SIGSEGV, segmentation fault occurred >>> Image PC Routine Line >>> Source >>> siesta 0000000000837F53 Unknown Unknown Unknown >>> siesta 00000000007A1945 Unknown Unknown Unknown >>> siesta 000000000079E718 Unknown Unknown Unknown >>> siesta 00000000004C7FCF Unknown Unknown Unknown >>> siesta 0000000000442972 Unknown Unknown Unknown >>> siesta 0000000000433DAD Unknown Unknown Unknown >>> siesta 00000000004FD92C Unknown Unknown Unknown >>> siesta 0000000000521083 Unknown Unknown Unknown >>> siesta 00000000005211F7 Unknown Unknown Unknown >>> siesta 0000000000407462 Unknown Unknown Unknown >>> libc.so.6 000000329181D8A4 Unknown Unknown Unknown >>> siesta 00000000004073A9 Unknown Unknown Unknown >>> forrtl: severe (174): SIGSEGV, segmentation fault occurred >>> Image PC Routine Line >>> Source >>> siesta 0000000000837F53 Unknown Unknown Unknown >>> siesta 00000000007A1945 Unknown Unknown Unknown >>> siesta 000000000079E718 Unknown Unknown Unknown >>> siesta 00000000004C7FCF Unknown Unknown Unknown >>> siesta 0000000000442972 Unknown Unknown Unknown >>> siesta 0000000000433DAD Unknown Unknown Unknown >>> siesta 00000000004FD92C Unknown Unknown Unknown >>> siesta 0000000000521083 Unknown Unknown Unknown >>> siesta 00000000005211F7 Unknown Unknown Unknown >>> siesta 0000000000407462 Unknown Unknown Unknown >>> libc.so.6 000000329181D8A4 Unknown Unknown Unknown >>> siesta 00000000004073A9 Unknown Unknown Unknown >>> >>> ----------------------------------------------------------------------------- >>> One of the processes started by mpirun has exited with a nonzero exit >>> code. This typically indicates that the process finished in error. >>> If your process did not finish in error, be sure to include a "return >>> 0" or "exit(0)" in your C code before exiting the application. >>> >>> PID 19071 failed on node n0 (127.0.0.1) with exit status 174. >>> >>> ----------------------------------------------------------------------------- >>> >>> I attach here the arch.make file. >>> >>> PLease guide for this error. >>> >> >> >> >> -- >> Kind regards Nick >> >> > > > -- > Kind regards Nick > > -- Kind regards Nick
