Hi Oded, Thanks for your interest in iProphet. When you use iProphet to combine the results of multiple search engines (although this is not a prerequisite for using iProphet), then iProphet will report the top scoring DB engine hit in the pepXML file for each spectrum searched. You will have a heterogeneous pepXML file with entries from multiple search engines you used. Currently, there is no way to display the search engine information in the pepXMLViewer, this is a feature that we hope to add to the viewer in the future.
We are currently in the thralls of working on an iProphet journal publication; I first presented the tool on posters at ASMS 2008 and World HUPO 2008, you should be able to find these at the following link: http://www.proteomecenter.org/Posters.php -David P.S. Sorry about the delayed response. I've been on parental leave and working less than full time for the past few weeks. On Wed, May 6, 2009 at 5:37 AM, Oded <oded.kleif...@gmail.com> wrote: > > Hi all, > Is there a way to display Mascot or/and X!tandem search scores (ion > score/expect) in iProphet.pep.xml? > I'm using TPP v4.3 JETSTREAM (unstable dev prerelease) rev 0 on Mac Os > X but had the same issue with TPP 4.2.0 on WinXP. > In addition what is the proper reference for citing iProphet (if there > is one)? > Any help would be highly appreciated. > Oded > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
