spctools-discuss

Messages by Date

2018/06/02 [spctools-discuss] Re: Convert mgf to mzML/mzXML Michael Hoopmann
2018/06/02 [spctools-discuss] Re: Convert mgf to mzML/mzXML Panos Ioannidis
2018/06/02 [spctools-discuss] Re: General Questions on Protein Quantification with StPeter and coupling to output of SearchGUI Antonio Ortega
2018/06/01 [spctools-discuss] Re: Convert mgf to mzML/mzXML Michael Hoopmann
2018/06/01 Re: [spctools-discuss] StPeter blank values Michael Hoopmann
2018/06/01 [spctools-discuss] Re: TPP 5.1.0 installation fails Michael Hoopmann
2018/06/01 [spctools-discuss] TPP @ ASMS -- booth #203 + Wednesday Workshop Luis Mendoza
2018/05/31 [spctools-discuss] Convert mgf to mzML/mzXML Panos Ioannidis
2018/05/31 [spctools-discuss] Re: Running database search from commandline Panos Ioannidis
2018/05/30 Re: [spctools-discuss] StPeter blank values Alexander Pelletier
2018/05/29 [spctools-discuss] TPP 5.1.0 installation fails Panos Ioannidis
2018/05/25 RE: [spctools-discuss] StPeter blank values Michael Hoopmann
2018/05/25 Re: [spctools-discuss] StPeter blank values Alexander Pelletier
2018/05/22 [spctools-discuss] Re: MsFragger vs Comet David Zhao
2018/05/22 [spctools-discuss] Re: General Questions on Protein Quantification with StPeter and coupling to output of SearchGUI Michael Hoopmann
2018/05/22 [spctools-discuss] Re: MsFragger vs Comet Alexey Nesvizhskii
2018/05/22 Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities Alexey Nesvizhskii
2018/05/22 [spctools-discuss] TPP unable to complete Analysis using -dDECOY annie . ha
2018/05/22 Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities David Shteynberg
2018/05/22 [spctools-discuss] MsFragger vs Comet David Zhao
2018/05/22 Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities Piero Giansanti
2018/05/20 Re: [spctools-discuss] Re: Using PeptideProphet on SearchGUI output David Shteynberg
2018/05/20 Re: [spctools-discuss] Re: Using PeptideProphet on SearchGUI output David Shteynberg
2018/05/20 [spctools-discuss] Re: Using PeptideProphet on SearchGUI output Antonio Ortega
2018/05/19 [spctools-discuss] Using PeptideProphet on SearchGUI output Antonio Ortega
2018/05/19 [spctools-discuss] General Questions on Protein Quantification with StPeter and coupling to output of SearchGUI Antonio Ortega
2018/05/18 [spctools-discuss] analysing PTMprophet output Emma Whittington
2018/05/18 Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities David Shteynberg
2018/05/18 Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities Piero Giansanti
2018/05/18 Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities David Shteynberg
2018/05/18 [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities Piero Giansanti
2018/05/16 RE: [spctools-discuss] StPeter blank values Michael Hoopmann
2018/05/11 [spctools-discuss] Re: Export mzIndentML not recognizing file Alexander Pelletier
2018/05/07 Re: [spctools-discuss] Re: No prot-MODELS Luis Mendoza
2018/05/07 Re: [spctools-discuss] Re: No prot-MODELS Heeyoun Hwang
2018/05/07 Re: [spctools-discuss] Re: No prot-MODELS Luis Mendoza
2018/05/04 Re: [spctools-discuss] Duplicate peptides in consensus spectral library with different protein identifications Sami Pietilä
2018/05/04 [spctools-discuss] Re: No prot-MODELS Heeyoun Hwang
2018/05/04 [spctools-discuss] Re: Export mzIndentML not recognizing file Heeyoun Hwang
2018/05/03 RE: [spctools-discuss] Duplicate peptides in consensus spectral library with different protein identifications Eric Deutsch
2018/05/03 [spctools-discuss] Duplicate peptides in consensus spectral library with different protein identifications Sami Pietilä
2018/05/01 [spctools-discuss] No prot-MODELS Heeyoun Hwang
2018/04/17 [spctools-discuss] Export mzIndentML not recognizing file Alexander Pelletier
2018/04/13 [spctools-discuss] Mascot automatic decoy xinteract Dr. Andreas Otto
2018/04/04 Re: [spctools-discuss] XPRESS fails with big iProphet analyzed files TPP 5.1, Windows 7 Alejandro
2018/03/28 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/03/28 Re: [spctools-discuss] XPRESS fails with big iProphet analyzed files TPP 5.1, Windows 7 David Shteynberg
2018/03/28 [spctools-discuss] XPRESS fails with big iProphet analyzed files TPP 5.1, Windows 7 Alejandro
2018/03/28 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/03/27 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/03/25 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/03/25 [spctools-discuss] Stpeter comet vs Xtandem? Jason Winget
2018/03/24 [spctools-discuss] Stpeter comet vs Xtandem? Volkix
2018/03/23 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/03/23 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/03/22 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/03/22 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/03/22 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/03/22 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/03/20 Re: [spctools-discuss] Index mzXML file error Pavel
2018/03/19 Re: [spctools-discuss] Index mzXML file error Luis Mendoza
2018/03/19 [spctools-discuss] TPP for large databases/ metaproteomics Andreas Otto
2018/03/19 [spctools-discuss] TPP for large databases/ metaproteomics Dr. Andreas Otto
2018/03/19 Re: [spctools-discuss] Exporting Proteome Discoverer 2.2 results to TPP David Shteynberg
2018/03/17 [spctools-discuss] Index mzXML file error Pavel
2018/03/17 [spctools-discuss] Re: Exporting Proteome Discoverer 2.2 results to TPP Alejandro
2018/03/14 [spctools-discuss] Exporting Proteome Discoverer 2.2 results to TPP Joseph Gillen
2018/03/12 [spctools-discuss] SpectraST OpenModTierSearch invalid pointer crash wout
2018/03/12 [spctools-discuss] SpectraST: Can't process NIST .msp file wout
2018/03/02 Re: [spctools-discuss] Interact parser multithreading Volkix
2018/03/01 Re: [spctools-discuss] Interact parser multithreading David Shteynberg
2018/03/01 Re: [spctools-discuss] Interact parser multithreading Volkix
2018/03/01 Re: [spctools-discuss] Interact parser multithreading David Shteynberg
2018/03/01 [spctools-discuss] Interact parser multithreading Volkix
2018/03/01 Re: [spctools-discuss] TPP: Comet search output for decoys does not look correct (for .pep.xml and .pin files) Francesca Barry
2018/03/01 Re: [spctools-discuss] TPP: Comet search output for decoys does not look correct (for .pep.xml and .pin files) Jimmy Eng
2018/03/01 [spctools-discuss] TPP: Comet search output for decoys does not look correct (for .pep.xml and .pin files) Francesca Barry
2018/02/21 Re: [spctools-discuss] Installing TPP 5.1.0 on RHEL 7 gives error Joshua Dunham
2018/02/20 RE: [spctools-discuss] TPP build issues on an Ubuntu 17 system Eric Deutsch
2018/02/20 Re: [spctools-discuss] Installing TPP 5.1.0 on RHEL 7 gives error Monica HPC
2018/02/18 Re: [spctools-discuss] TPP build issues on an Ubuntu 17 system kumar
2018/02/15 [spctools-discuss] Tandem error: Rerunning the iTRAQ fractions are giving repeted same error at the end of the completion in tandem Syed Azmal Ali
2018/02/14 RE: [spctools-discuss] Installing TPP 5.1.0 on RHEL 7 gives error Michael Hoopmann
2018/02/14 [spctools-discuss] Installing TPP 5.1.0 on RHEL 7 gives error Monica HPC
2018/02/13 RE: [spctools-discuss] TPP build issues on an Ubuntu 17 system Eric Deutsch
2018/02/12 [spctools-discuss] TPP build issues on an Ubuntu 17 system kumar
2018/02/12 Re: [spctools-discuss] Re: StPeter documentation Michael Hoopmann
2018/02/12 Re: [spctools-discuss] X!tandem stops after a few searches Luis Mendoza
2018/02/12 Re: [spctools-discuss] X!tandem stops after a few searches Volkix
2018/02/12 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/02/12 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/02/09 Re: [spctools-discuss] X!tandem stops after a few searches Volkix
2018/02/09 Re: [spctools-discuss] X!tandem stops after a few searches Luis Mendoza
2018/02/09 Re: [spctools-discuss] X!tandem stops after a few searches Volkix
2018/02/09 Re: [spctools-discuss] X!tandem stops after a few searches Luis Mendoza
2018/02/09 [spctools-discuss] X!tandem stops after a few searches Volkix
2018/02/08 [spctools-discuss] Re: Help! - The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. Stanislav Luban
2018/02/06 [spctools-discuss] LDAP Authentication Thomas Mohr
2018/02/05 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/02/05 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/02/05 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/02/05 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/02/05 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/02/05 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/02/05 RE: [spctools-discuss] Re: Help! - The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. Eric Deutsch
2018/02/04 [spctools-discuss] Re: Help! - The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. Stanislav Luban
2018/02/01 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/02/01 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/01/31 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/01/31 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/01/31 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/01/30 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/01/30 RE: [spctools-discuss] Re: Help! - The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. Eric Deutsch
2018/01/30 [spctools-discuss] Re: Help! - The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. Stanislav Luban
2018/01/30 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/01/28 [spctools-discuss] Re: Help! - The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. Stanislav Luban
2018/01/25 RE: [spctools-discuss] Help! - The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. Eric Deutsch
2018/01/25 [spctools-discuss] Help! - The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. Stanislav Luban
2018/01/25 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. Stanislav Luban
2018/01/21 [spctools-discuss] SpectraST? kmorgenstern5
2018/01/21 [spctools-discuss] SpectraST Questions kmorgenstern5
2018/01/20 Re: [spctools-discuss] Re: Problem with xinteract/peptide prophet Vipul Batra
2018/01/17 Re: [spctools-discuss] Re: Problem with xinteract/peptide prophet Luis Mendoza
2018/01/17 Re: [spctools-discuss] Re: Problem with xinteract/peptide prophet Vipul Batra
2018/01/17 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/01/17 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/01/17 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/01/17 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/01/17 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/01/17 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/01/16 Re: [spctools-discuss] Re: Problem with xinteract/peptide prophet Luis Mendoza
2018/01/16 Re: [spctools-discuss] PeptideProphet - Using other search program outputs (Byonic) David Shteynberg
2018/01/15 [spctools-discuss] Re: Problem with xinteract/peptide prophet Vipul Batra
2018/01/15 [spctools-discuss] PeptideProphet - Using other search program outputs (Byonic) M McDermott
2018/01/12 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/01/11 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/01/11 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/01/09 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2018/01/09 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2018/01/05 Re: [spctools-discuss] TPP documentation issue David Shteynberg
2018/01/05 Re: [spctools-discuss] TPP documentation issue Zack Potter
2018/01/05 Re: [spctools-discuss] TPP documentation issue David Shteynberg
2018/01/05 Re: [spctools-discuss] TPP documentation issue Paul Abraham
2018/01/05 [spctools-discuss] Re: Software documentation issue Paul Abraham
2018/01/05 [spctools-discuss] Software documentation issue Paul Abraham
2018/01/05 Re: [spctools-discuss] TPP documentation issue David Shteynberg
2018/01/05 Re: [spctools-discuss] TPP documentation issue Hampton, Brian
2018/01/05 [spctools-discuss] TPP documentation issue Paul Abraham
2017/12/28 RE: [spctools-discuss] Selenocysteine in Kojak Michael Hoopmann
2017/12/28 RE: [spctools-discuss] Selenocysteine in Kojak Maria Indeykina
2017/12/28 Re: [spctools-discuss] TPP 5.1.0 David Shteynberg
2017/12/28 RE: [spctools-discuss] Selenocysteine in Kojak Michael Hoopmann
2017/12/27 [spctools-discuss] Selenocysteine in Kojak Mariya Indeykina
2017/12/27 [spctools-discuss] TPP 5.1.0 md qudratullah
2017/12/22 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2017/12/20 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2017/12/19 Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
2017/12/19 [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
2017/12/16 [spctools-discuss] TPP_5.1.0 installation md qudratullah
2017/12/15 Re: [spctools-discuss] Use of XPRESS intensities in Peptide/ProteinProphet and XPRESS settings for high-res MS TPP 5.1 Luis Mendoza
2017/12/15 Re: [spctools-discuss] How to use PeptideProphet with a pepxml file as its input argument? Luis Mendoza
2017/12/15 Re: [spctools-discuss] TPP 5.X removed NOPLOT, but xinteract appears to not have been updated for the change Luis Mendoza
2017/12/15 Re: R: [spctools-discuss] Re: StPeter documentation Jason
2017/12/15 [spctools-discuss] How to use PeptideProphet with a pepxml file as its input argument? Mohammad Taheri
2017/12/15 [spctools-discuss] How to use PeptideProphet with a pep.xml file as its input argument? Mohammad Taheri
2017/12/15 R: [spctools-discuss] Re: StPeter documentation Filippo GENOVESE
2017/12/14 RE: [spctools-discuss] Re: StPeter documentation Michael Hoopmann
2017/12/14 Re: [spctools-discuss] TPP_5.1.0 Luis Mendoza
2017/12/13 [spctools-discuss] TPP_5.1.0 md qudratullah
2017/12/12 Re: [spctools-discuss] Problem of model fitting (PeptideProphet) using MS-GF+ results Jonghun Park
2017/12/12 Re: [spctools-discuss] TPP 5.X removed NOPLOT, but xinteract appears to not have been updated for the change jony
2017/12/12 Re: [spctools-discuss] Problem of model fitting (PeptideProphet) using MS-GF+ results David Shteynberg
2017/12/12 Re: [spctools-discuss] Problem of model fitting (PeptideProphet) using MS-GF+ results Jonghun Park
2017/12/12 Re: [spctools-discuss] Re: StPeter documentation Jason Winget
2017/12/11 Re: [spctools-discuss] TPP 5.X removed NOPLOT, but xinteract appears to not have been updated for the change Luis Mendoza
2017/12/11 [spctools-discuss] TPP 5.X removed NOPLOT, but xinteract appears to not have been updated for the change jony
2017/12/11 Re: [spctools-discuss] Re: StPeter documentation Filippo GENOVESE
2017/12/08 Re: [spctools-discuss] Less protein IDs after running iProphet Alejandro
2017/12/07 [spctools-discuss] Problem with peptide quantitation with ASAPRatio Li Ning
2017/12/05 Re: [spctools-discuss] Less protein IDs after running iProphet David Shteynberg
2017/12/05 Re: [spctools-discuss] Less protein IDs after running iProphet Alejandro
2017/12/01 [spctools-discuss] SpectraST Genet
2017/11/28 Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... David Shteynberg
2017/11/23 Re: [spctools-discuss] Use of XPRESS intensities in Peptide/ProteinProphet and XPRESS settings for high-res MS TPP 5.1 Alejandro
2017/11/22 Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Adam R
2017/11/22 Re: [spctools-discuss] Use of XPRESS intensities in Peptide/ProteinProphet and XPRESS settings for high-res MS TPP 5.1 Luis Mendoza
2017/11/22 Re: [spctools-discuss] Problem with Ubiquitination tag on spectrast Marine
2017/11/21 Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Luis Mendoza
2017/11/21 Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Adam R
2017/11/21 Re: [spctools-discuss] Use of XPRESS intensities in Peptide/ProteinProphet and XPRESS settings for high-res MS TPP 5.1 Alejandro
2017/11/21 Re: [spctools-discuss] Use of XPRESS intensities in Peptide/ProteinProphet and XPRESS settings for high-res MS TPP 5.1 Luis Mendoza
2017/11/20 [spctools-discuss] make with simultaneous jobs - does it work? lejeczek
2017/11/20 [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... lejeczek
2017/11/19 Re: [spctools-discuss] Analyze peptides- error David Shteynberg
2017/11/19 Re: [spctools-discuss] Analyze peptides- error Elkan Dong
2017/11/19 Re: [spctools-discuss] Use of XPRESS intensities in Peptide/ProteinProphet and XPRESS settings for high-res MS TPP 5.1 Alejandro
2017/11/17 Re: [spctools-discuss] Analyze peptides- error np . dong572
2017/11/17 Re: [spctools-discuss] Problem with Ubiquitination tag on spectrast Luis Mendoza
2017/11/17 Re: [spctools-discuss] Use of XPRESS intensities in Peptide/ProteinProphet and XPRESS settings for high-res MS TPP 5.1 Luis Mendoza
2017/11/17 Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Luis Mendoza