Antonio, That warning about not being able to open the mzXML file is not indicative of the underlying problem. It is truly just a warning and the analysis process is capable of finishing correctly even if the corresponding mzXML file is missing.
The important question that's not clear from your description below is how did you run the Sequest search? Did you run it separately via Bioworks or did you run the search through the TPP? Although helpful but not required, it doesn't seem like you did the latter. Do you have a directory (e.g. c:/Inetpub/wwwroot/ISB/data/AAS/test/) that has the Sequest .out files in it? - Jimmy Antonio wrote: > I have installed TPP v4.2 on windows XP. I have created the mzXML > datafiles from my Sequest search. Now I'm making the corresponding > pepXML files. I see that the first file is being created, it seems > that is finished but I see the following warming message at the end of > the “Output so far” field: > > warning: cannot open mzXML file "c:/Inetpub/wwwroot/ISB/data/AAS/ > test.mzXML" for reading MS instrument info and scan times. > And the command status window indicates that the command is still > running. Is it? I do not see the file increasing in size. I can open > the pepxml file, although IE indicates that there is an error on page. > It seems to me that the program is stuck and is not progressing to > next task: the creation of the next pepXML file. Solutions? > > Thanks, > > Antonio > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
