At a minimum, just delete (or rename) the c:\Inetpub\ipp-bin directory to make sure it isn't messing with your PATH.
Brian -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Natalie Tasman Sent: Wednesday, July 08, 2009 11:13 AM To: [email protected] Subject: [spctools-discuss] Re: Can't covert to mzXML Following up with Brian's comment today, the 'ReAdW datafile name c' syntax is from an older version of ReAdW than what's in the current TPP 4.2.1. You might want to consider backing up your data, and then completely uninstalling your software and possibly deleting c:/ Inetpub, before reinstalling the current TPP. Natalie On Jul 8, 2009, at 1:48 AM, Ali wrote: > > Hi Natalie > > Thank you for your reply. > > I am not using the command-line version. I had downloaded the full > TPP on windows but when I try to convert the .raw files to .mzXML in > the GUI version, it complains of '--mzXML unknown option'. > > I think whats happening is that ReAdW will work only if you run it in > the directory that its located in, but if you try to run it in another > directory it doesn't work. However if I try to run it in any > directory using the command: 'ReAdW datafile name c', it works, but > doesn't generate the mzXML file. I suppose what I want to know is > this: When the GUI version runs the command 'ReAdW etc' where does it > read the ReAdW file from? In another words, How can I know the path > from which the GUI runs ReAdW? > > Thanks > > Ali > > On Jul 7, 6:02 pm, Natalie Tasman <[email protected]> > wrote: >> Hello Ali, >> It sounds like you're using the command-line version of the converter >> ("ReAdW"). The easiest way to get started with the TPP on Windows is >> to download the complete TPP installer, which will set up and >> configure a web-based interface. This interface should be a lot >> easier to use. >> >> If you do want to stick with the command-line version, you just need >> to type "readw.exe --mzXML <your filename.raw>", >> to specify mzXML output. >> >> Best wishes, and please let us know how it goes, >> >> Natalie >> >> On Tue, Jul 7, 2009 at 4:39 AM, Ali <[email protected]> >> wrote: >> >>> Hi >> >>> I'm new to TPP. I downloaded the software and attempted to convert >>> XCalibur .RAW to mzXML files as the first step of the pipeline. >>> This >>> however failed as it complains of '--mzXML unknown option'. I >>> checked >>> in my tpp-bin file that I have the ReAdW file. I used the ReAdW in >>> dos and it converted the .RAW file but it doesn't seem to work in >>> TPP. Any advice will be appreciated. > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
