Hi , Is it possible to get this bug fix (thanks again Brian) into windows installation package? Thanks, Oded
On Aug 17, 9:48 pm, "Brian Pratt" <[email protected]> wrote: > It would be interesting to see the difference between themzXMLfile that > worked and the one that didn't. > > X!Tandem has its ownmzXMLparser and it might need a tweak. Perhaps you > could send me those files? > > Thanks, > > Brian > > -----Original Message----- > From: [email protected] > > [mailto:[email protected]] On Behalf OfOded > Sent: Saturday, August 15, 2009 1:08 PM > To: spctools-discuss > Subject: [spctools-discuss] RAW tomzXML(and mzXL) problem TPP4.3 > > Hi, > I'm having problems converting RAW data tomzXMLwith TPP4.3. > I tested different files on 2 different WinXP computers installed with > TPP4.3. The conversion tomzXMLgoes just fine and the output can be > used with Pep3D. > However, while trying to run a Tandem search with the > TPP4.3-generatedmzXMLfile as input the following error message pop-up: > run_in.exe error > run_in.exe has encountered a problem and needs to close. We are sorry > for the inconvenience. > In the detailes section I can see that the error signature is: > szAppName : run_in.exe szAppVer : 0.0.0.0 szModName : > msvcrt.dll > szModVer : 7.0.2600.5512 offset : 00037b26 > If I try to use the samemzXMLfor X! Tandem search on a Mac running > TPP 4.3 (or 4.2) I'm getting the following message: > X! TANDEM 2 (2007.07.01.3) > Loading spectra .Unsupported compression type 'none'. > Command FAILED > I tried to use different conversion options (i.e profile, centroid, > with or with out comprssing) but still got the same error messages. > > In addition conversion to mzXL failed showing the following error > message > > c:\Inetpub\tpp-bin\msconvert -v --mzML -o c:/Inetpub/wwwroot/ISB/data/ > Test/Markers -c [1,2] c:/Inetpub/wwwroot/ISB/data/Test/Markers/ > LFok08.RAW > > Unable to read configuration file [1,2] > > format: mzML (Precision_64 [ 1000514:Precision_64 > 1000515:Precision_32 ], ByteOrder_LittleEndian, Compression_None) > indexed="true" > outputPath: c:/Inetpub/wwwroot/ISB/data/Test/Markers > extension: .mzML > contactFilename: > > filters: > > filenames: > c:/Inetpub/wwwroot/ISB/data/Test/Markers/LFok08.RAW > > processing file: c:/Inetpub/wwwroot/ISB/data/Test/Markers/LFok08.RAW > [MSDataFile::readFile()] Unsupported file format. > Error processing file c:/Inetpub/wwwroot/ISB/data/Test/Markers/ > LFok08.RAW > > Converting the same files on TPP4.2 (rev1) generate fully > "fuctional"mzXMLfiles. > Any help would be appreciated,Oded --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
