Thanks Natalie,
On Sep 9, 11:57 pm, Natalie Tasman <[email protected]>
wrote:
> Hello Oded,
>
> Please see the recently released 4.3.1 version of the TPP, which
> contains the fix that you mention.
>
> Best wishes,
>
> Natalie
>
> On Sep 9, 2009, at 12:49 PM, Oded wrote:
>
>
>
> > Hi ,
> > Is it possible to get this bug fix (thanks again Brian) into windows
> > installation package?
> > Thanks,
> > Oded
>
> > On Aug 17, 9:48 pm, "Brian Pratt" <[email protected]> wrote:
> >> It would be interesting to see the difference between themzXMLfile
> >> that
> >> worked and the one that didn't.
>
> >> X!Tandem has its ownmzXMLparser and it might need a tweak. Perhaps
> >> you
> >> could send me those files?
>
> >> Thanks,
>
> >> Brian
>
> >> -----Original Message-----
> >> From: [email protected]
>
> >> [mailto:[email protected]] On Behalf OfOded
> >> Sent: Saturday, August 15, 2009 1:08 PM
> >> To: spctools-discuss
> >> Subject: [spctools-discuss] RAW tomzXML(and mzXL) problem TPP4.3
>
> >> Hi,
> >> I'm having problems converting RAW data tomzXMLwith TPP4.3.
> >> I tested different files on 2 different WinXP computers installed
> >> with
> >> TPP4.3. The conversion tomzXMLgoes just fine and the output can be
> >> used with Pep3D.
> >> However, while trying to run a Tandem search with the TPP4.3-
> >> generatedmzXMLfile as input the following error message pop-up:
> >> run_in.exe error
> >> run_in.exe has encountered a problem and needs to close. We are
> >> sorry
> >> for the inconvenience.
> >> In the detailes section I can see that the error signature is:
> >> szAppName : run_in.exe szAppVer : 0.0.0.0 szModName :
> >> msvcrt.dll
> >> szModVer : 7.0.2600.5512 offset : 00037b26
> >> If I try to use the samemzXMLfor X! Tandem search on a Mac running
> >> TPP 4.3 (or 4.2) I'm getting the following message:
> >> X! TANDEM 2 (2007.07.01.3)
> >> Loading spectra .Unsupported compression type 'none'.
> >> Command FAILED
> >> I tried to use different conversion options (i.e profile, centroid,
> >> with or with out comprssing) but still got the same error messages.
>
> >> In addition conversion to mzXL failed showing the following error
> >> message
>
> >> c:\Inetpub\tpp-bin\msconvert -v --mzML -o c:/Inetpub/wwwroot/ISB/
> >> data/
> >> Test/Markers -c [1,2] c:/Inetpub/wwwroot/ISB/data/Test/Markers/
> >> LFok08.RAW
>
> >> Unable to read configuration file [1,2]
>
> >> format: mzML (Precision_64 [ 1000514:Precision_64
> >> 1000515:Precision_32 ], ByteOrder_LittleEndian, Compression_None)
> >> indexed="true"
> >> outputPath: c:/Inetpub/wwwroot/ISB/data/Test/Markers
> >> extension: .mzML
> >> contactFilename:
>
> >> filters:
>
> >> filenames:
> >> c:/Inetpub/wwwroot/ISB/data/Test/Markers/LFok08.RAW
>
> >> processing file: c:/Inetpub/wwwroot/ISB/data/Test/Markers/LFok08.RAW
> >> [MSDataFile::readFile()] Unsupported file format.
> >> Error processing file c:/Inetpub/wwwroot/ISB/data/Test/Markers/
> >> LFok08.RAW
>
> >> Converting the same files on TPP4.2 (rev1) generate fully
> >> "fuctional"mzXMLfiles.
> >> Any help would be appreciated,Oded
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