Hello Oded, Please see the recently released 4.3.1 version of the TPP, which contains the fix that you mention.
Best wishes, Natalie On Sep 9, 2009, at 12:49 PM, Oded wrote: > > Hi , > Is it possible to get this bug fix (thanks again Brian) into windows > installation package? > Thanks, > Oded > > On Aug 17, 9:48 pm, "Brian Pratt" <[email protected]> wrote: >> It would be interesting to see the difference between themzXMLfile >> that >> worked and the one that didn't. >> >> X!Tandem has its ownmzXMLparser and it might need a tweak. Perhaps >> you >> could send me those files? >> >> Thanks, >> >> Brian >> >> -----Original Message----- >> From: [email protected] >> >> [mailto:[email protected]] On Behalf OfOded >> Sent: Saturday, August 15, 2009 1:08 PM >> To: spctools-discuss >> Subject: [spctools-discuss] RAW tomzXML(and mzXL) problem TPP4.3 >> >> Hi, >> I'm having problems converting RAW data tomzXMLwith TPP4.3. >> I tested different files on 2 different WinXP computers installed >> with >> TPP4.3. The conversion tomzXMLgoes just fine and the output can be >> used with Pep3D. >> However, while trying to run a Tandem search with the TPP4.3- >> generatedmzXMLfile as input the following error message pop-up: >> run_in.exe error >> run_in.exe has encountered a problem and needs to close. We are >> sorry >> for the inconvenience. >> In the detailes section I can see that the error signature is: >> szAppName : run_in.exe szAppVer : 0.0.0.0 szModName : >> msvcrt.dll >> szModVer : 7.0.2600.5512 offset : 00037b26 >> If I try to use the samemzXMLfor X! Tandem search on a Mac running >> TPP 4.3 (or 4.2) I'm getting the following message: >> X! TANDEM 2 (2007.07.01.3) >> Loading spectra .Unsupported compression type 'none'. >> Command FAILED >> I tried to use different conversion options (i.e profile, centroid, >> with or with out comprssing) but still got the same error messages. >> >> In addition conversion to mzXL failed showing the following error >> message >> >> c:\Inetpub\tpp-bin\msconvert -v --mzML -o c:/Inetpub/wwwroot/ISB/ >> data/ >> Test/Markers -c [1,2] c:/Inetpub/wwwroot/ISB/data/Test/Markers/ >> LFok08.RAW >> >> Unable to read configuration file [1,2] >> >> format: mzML (Precision_64 [ 1000514:Precision_64 >> 1000515:Precision_32 ], ByteOrder_LittleEndian, Compression_None) >> indexed="true" >> outputPath: c:/Inetpub/wwwroot/ISB/data/Test/Markers >> extension: .mzML >> contactFilename: >> >> filters: >> >> filenames: >> c:/Inetpub/wwwroot/ISB/data/Test/Markers/LFok08.RAW >> >> processing file: c:/Inetpub/wwwroot/ISB/data/Test/Markers/LFok08.RAW >> [MSDataFile::readFile()] Unsupported file format. >> Error processing file c:/Inetpub/wwwroot/ISB/data/Test/Markers/ >> LFok08.RAW >> >> Converting the same files on TPP4.2 (rev1) generate fully >> "fuctional"mzXMLfiles. >> Any help would be appreciated,Oded > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
