Hallo, to my knowledge Proteome Discoverer 1.0 is not supporting batch processing yet. Should come with 1.1.
Dominik Nikhil Garge wrote: > Hello, > Anybody has experience using "Proteome Discoverer 1.0" software for > SEQUEST search. I use the Bioworks for SEQUEST search and new to > "Proteome Discoverer 1.0". few of my concerns are as follows: > a) How to perform SEQUEST BATCH search using "Proteome Discoverer > 1.0"? It seems to accept only ine raw file at a time. Do you know how > can one supply multiple raw files for SEQEUST search? > b) The output is *.msf file which can be exported into protXML file > format. So does this mean "Proteome Discoverer 1.0" uses Protein > Prophet algorithm to identify significant proteins? > c) The SEQUEST search done through "Proteome Discoverer 1.0" doesnt > seem to output *.out files (or pepXML files). I am more interested in > individual peptide hits but dont see how one can get 1st and 2nd hit > as we see in *.out file using Bioworks). > I would really appreciate your feedback on this. > Thanks, > ~Nikhil. > > > -- Dr. Dominik Schwudke Group Leader National Centre for Biological Sciences Tata Institute of Fundamental Research GKVK, Bellary Road, Bangalore 560065, India Phone +91-80 – 23666499 [email protected] --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
