Impressive! I'm unclear, though, on the practicalities of how it replaces xsltproc (which is an executable) - presumably there's a script that invokes java? In which case we have a TPP java dependency we didn't have before - not that this is necessarily an insurmountable problem, and one we'll probably have to address sooner than later anyway.
Brian Pratt On Wed, Dec 2, 2009 at 4:28 AM, dctrud <[email protected]> wrote: > Have obtained a Saxon-EE evaluation to try it. Same .prot.xml file, > same server - 35.04s (3.5% of the xsltproc run-time). Down side is > that it costs 300 GBP per server. > > DT > > On Dec 2, 10:45 am, dctrud <[email protected]> wrote: > > I've just done a quick comparison of the speeds of various XSLT > > processors for transforming .prot.xml to html. There is a marked > > difference between the processors, and xsltproc which is the TPP > > default is not the quickest. > > > > Tests performed on Ubuntu 9.0x 64-bit on a DELL R600 Dual Xeon 5500 > > 32GB RAM. All processors are installed from their Ubuntu packages. > > Input document was a large 200Mb .prot.xml file resulting from OMSSA > > search of the 72-run MaxQuant dataset downloaded from ProteomeCommons: > > > > xsltproc - 1011.96s > > xalan - 1206.95 > > saxon-xslt - 491.95s > > saxonb-xslt - 132.19s > > > > saxonb-xslt works for me as a direct replacement for xsltproc in the > > $xsltproc definition in protxml2html.pl > > > > I've not tried the commercial Saxon-SA / Saxon-EE from Saxonica.com, > > but they are supposedly faster still. > > > > DT > > -- > > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
