Hi There,
I noticed an issue in Tandem2XML program. When the
program encounters a modification that is not in input parameters, it
issues an "unknown modification" warning and ignores it. However, this
often happens when people search for point mutations with X! Tandem. I
fixed the program such that it will write any unknown modifications to
the pepXML instead of ignoring them. Let me know if you are interested
in getting the fix into your source tree.
Thanks,
Surendra
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