Hi HTH, you may be right - I will have a closer look at the path. Thanks for your help! Happy Holidays!
Hannes 2009/12/22 GATTACA <[email protected]>: > No but it might help in debugging. You say TPP can't see the database > file in '/dbase/IPI/' which could mean that you store all your fasta > files in a directory called /dbase on a linux system. Alternatively, > this could be on a Windows system running cygwin. I couldn't tell > based on the error message. > I think Sequest file paths on Windows should look like this: C:\dbase > \IPI\ipi.MOUSE.v3.64_DECOY.fasta > NOT like what you posted: '/dbase/IPI/ipi.MOUSE.v3.64_DECOY.fasta' > > Get the full path to your fasta file using Windows Explorer and use > that path in Sequest. > > HTH, > GATTACA > > > On Dec 22, 3:42 am, hcadrexler <[email protected]> wrote: >> I am running Windows XP 32-bit - would it make a difference? >> >> On 21 Dez., 16:53, GATTACA <[email protected]> wrote: >> >> > What OS are you running? Windows? Linux? >> >> > On Dec 21, 3:54 am, hcadrexler <[email protected]> wrote: >> >> > > Hi everybody, >> >> > > currently I am trying to work my way through TPP. Subsequent to >> > > converting my Thermo .raw files to mzXML I tried to do a Sequest >> > > search with these files, using a decoy database that I generated with >> > > the TPP tool Decoy Database. Conversion seemed to work properly, >> > > however, when I start the search I immediately get the error message >> > > "Cannot read the database file '/dbase/IPI/ >> > > ipi.MOUSE.v3.64_DECOY.fasta'. Check that this filename is correct.". >> > > The file name appears to be correct, the file is located where it is >> > > supposed to be, the database is specified in the params file, yet.... >> > > Does anybody have a clue on what might have gone wrong? > > -- > > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
