Looking at the code I can see where this would easily become diskbound for large data sets - it reads and rereads the same pepXML files repeatedly, but the effect is probably masked by disk cacheing up to a certain point. Somebody would need to write some logic for cacheing the file contents to speed this up properly.
Brian On Thu, Feb 4, 2010 at 12:09 PM, Jake W <jrwba...@gmail.com> wrote: > I've seen the same thing. On datasets where > ASAPRatioPeptideRatioParser completes in a few minutes, > ASAPRatioProteinRatioParser can take an hour or so. This is on a > Windows machine running TPP ver. 4.3.0. > > Jake > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to spctools-disc...@googlegroups.com. > To unsubscribe from this group, send email to > spctools-discuss+unsubscr...@googlegroups.com<spctools-discuss%2bunsubscr...@googlegroups.com> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-disc...@googlegroups.com. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
