Hi Sri,
Are you referring to converting from the proprietary XML export format
produced by their group2xml tool or the actual group file itself?
-Matt
newscientist_au wrote:
Hello all!
Hope the New Year's been treating you well so far!
I am wondering if anyone out there has managed to export ProteinPilot
results files (.group) to pepXML or any format which could be used to
feed into TPP? We use ProteinPilot 3.0 and Mascot for most of our
work, would be great to run iprophet on ProteinPilot and Mascot
results. For Mascot we use the .DAT file as input for TPP.
At the moment we can export results as txt files using ProteinPilot
but to convert it into a pepXML, I am not too sure if anyone's written
a script for it.
Or if anyone interested in developing one, I am happy to help!
Cheers
Sri
PS. Was great to hear Eric's talk at the Lorne Pre-Conference
workshop. Followed his new paper and the step by step installation/
Demo of TPP (http://tools.proteomecenter.org/wiki/index.php?
title=TPP_Demo2009) which runs you through many features of TPP, must
read for all new starters!
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