Hello, The tandem.xml parameters file is included in the same download as the fasta file. Please look again for this file, and copy it to the appropriate directory, as per the last bullet point in step 2 of the demo.
If you cannot find this file, please try re-downloading the "parameter_database" package (step 2, bullet point 3). Thanks for trying out our tools and tutorial, --Luis On Tue, Feb 9, 2010 at 3:37 PM, wvo079 <[email protected]> wrote: > Hi, > I am a first time user of spctools. I am trying to go through the demo > documented at > > http://tools.proteomecenter.org/wiki/index.php?title=TPP_Demo2009 > > I got stuck when I am trying to perform step 4: > 4. Search data with X!Tandem > > at the fourth bullet point: > Similarly, under Specify Tandem Parameters File choose the Tandem > parameters file called tandem.xml located in the same directory. > > In the downloaded archive, I could not find this tandem.xml file. > > Otherwise, I have downloaded the two mzxml files and the .fasta file. > > Could someone help me to find this parameterfile for this > demonstration? > > Thank you very much. > > wvo079 > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
