It's a software problem on a couple of levels. ReAdW was never intended for gcms data so it was never tested on those instruments and I would be surprised if it worked. Additionally, most if not all of the software tools that consume mzXML files probably won't work with the data, even if you could convert your gcms files to mzXML.
Maybe msconvert and mzML? On Feb 24, 4:01 pm, fgrun <[email protected]> wrote: > I obtain the following error message when trying to open converted RAW > --> mzXML mass spec data files in mzMine or other viewers: > > "java.lang.IlegalArgumentException: Missing parent scan information > for scan #1 (SimpleScan.java:72)" > > ReAdW was installed on a Dell workstation controlling a Thermo > Finnigan Trace GC Trace 2000 Series instrument using Xcalibur v 1.4 > software to process the RAW files to mzXML format. After resolving > initial problems by reinstalling a functioning copy of zlib1.dll, the > program seems to convert .RAW files appropriately to .mzXML format but > I cannot open or access the data in mzMine or Insilicos Viewer. > > Is this a software problem or do I need to set a different parameter > in the data collection settings for the GC instrument ? Any ideas or > suggestions would be welcome ! > > Thanks, > > fgrun -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
