I would advocate trying msconvert to convert to mzML as Jimmy suggests. If that doesn't work, then we have active leads that could likely fix that.
> -----Original Message----- > From: [email protected] [mailto:spctools- > [email protected]] On Behalf Of Jimmy Eng > Sent: Wednesday, March 03, 2010 5:44 PM > To: spctools-discuss > Subject: [spctools-discuss] Re: Problem converting Xcalibur.RAW to .mzXML > with ReAdW > > It's a software problem on a couple of levels. ReAdW was never > intended for gcms data so it was never tested on those instruments and > I would be surprised if it worked. Additionally, most if not all of > the software tools that consume mzXML files probably won't work with > the data, even if you could convert your gcms files to mzXML. > > Maybe msconvert and mzML? > > On Feb 24, 4:01 pm, fgrun <[email protected]> wrote: > > I obtain the following error message when trying to open converted RAW > > --> mzXML mass spec data files in mzMine or other viewers: > > > > "java.lang.IlegalArgumentException: Missing parent scan information > > for scan #1 (SimpleScan.java:72)" > > > > ReAdW was installed on a Dell workstation controlling a Thermo > > Finnigan Trace GC Trace 2000 Series instrument using Xcalibur v 1.4 > > software to process the RAW files to mzXML format. After resolving > > initial problems by reinstalling a functioning copy of zlib1.dll, the > > program seems to convert .RAW files appropriately to .mzXML format but > > I cannot open or access the data in mzMine or Insilicos Viewer. > > > > Is this a software problem or do I need to set a different parameter > > in the data collection settings for the GC instrument ? Any ideas or > > suggestions would be welcome ! > > > > Thanks, > > > > fgrun > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to spctools- > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
