Hi Andreas, You may need to re-number the indices so that the scans start at 1 have no gaps between subsequent ones, as well as adjust the total scan count in the header of the file. Then apply the re-indexing.
Hope this helps, --Luis On Tue, Mar 23, 2010 at 9:46 AM, Andreas Quandt <[email protected]> wrote: > dear list, > > i modified some of my mzXML files by removing ms2 spectra which did not > fulfill certain criteria. > afterwards i tried to analyze them via xtandem but got error messages like > "might be a corrupted file". > to overcome this problem i used indexmzXML which corrected the index by > generating a new mzXML file. > unfortunately this did not solve the problem as neither xtandem nor > mzxml2search where accepting the modified mzXML files as correct input. > > hence, i was wondering if there is either a better way to remove my ms2 > scans from the file or if i am using indexmzXML not in a proper way? > > cheers, > andreas > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
