Hi All, Are there any planned improvements or development of new tools for MS1 quantification. I use Xpress and it work pretty well for me but still require a bit of manual inspection. As for ASAPratio I find it to be usually off and to require a lot (too much) of manual inspection and correction (which is also not too user-friendly but this is a different story). More specificially, it would be great to have the ability for Xpress to calculate the protein ratios following the median of the identified peptides ratio and not the mean (as in MaxQuant). I tried to use Excel for such calculation after exporting ProteinProphet output (while checking the "show peptides" option) but currently only the mean ratio is being exported and not the specific ratio of each peptide within a protein.
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