Thanks Jimmy - that would be great. Oded On Apr 7, 6:24 pm, Jimmy Eng <jke...@gmail.com> wrote: > Sadly the need for manual inspection isn't going to go away soon but > things will get better with peak picking. I'll look into adding using > median instead of mean as a user option. > > On Wed, Apr 7, 2010 at 12:44 AM, Oded <oded.kleif...@gmail.com> wrote: > > Hi All, > > Are there any planned improvements or development of new tools for MS1 > > quantification. I use Xpress and it work pretty well for me but still > > require a bit of manual inspection. As for ASAPratio I find it to be > > usually off and to require a lot (too much) of manual inspection and > > correction (which is also not too user-friendly but this is a > > different story). > > More specificially, it would be great to have the ability for Xpress > > to calculate the protein ratios following the median of the identified > > peptides ratio and not the mean (as in MaxQuant). I tried to use Excel > > for such calculation after exporting ProteinProphet output (while > > checking the "show peptides" option) but currently only the mean ratio > > is being exported and not the specific ratio of each peptide within a > > protein. > > > Thanks, > > Oded > > > -- > > You received this message because you are subscribed to the Google Groups > > "spctools-discuss" group. > > To post to this group, send email to spctools-disc...@googlegroups.com. > > To unsubscribe from this group, send email to > > spctools-discuss+unsubscr...@googlegroups.com. > > For more options, visit this group > > athttp://groups.google.com/group/spctools-discuss?hl=en.
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