You may be trying it on a system without Thermo XCalibur. So, msconvert wont work in that case. For details , u can find the solution on this thread link-
http://groups.google.com/group/spctools-discuss/browse_thread/thread/a5aae3bb8a79c20e/c9d36a54ea33a338?lnk=gst&q=msfilereader#c9d36a54ea33a338 Regards, Amit Kumar Yadav Senior Research Fellow (SRF-CSIR) IGIB, New Delhi (India) http://masswiz.igib.res.in On Fri, Apr 23, 2010 at 12:10 PM, Gradjanin Grada <[email protected]> wrote: > Hello, > I have the same problem: restart does not help, new installation does not > help. However, after making several attempts I have managed to install TPP > and I can start it but not a single function works properly: I cannot > generate mzXML from any raw files (Thermo and Waters) neither can I > transform xml to any other format (such as pkl or mgf). Here is one output > example: > > > c:\Inetpub\tpp-bin\massWolf -v --mzXML -z -g > c:/Inetpub/wwwroot/ISB/data/markustest/MK-091130_A5.raw > > > > *c:/Inetpub/wwwroot/ISB/data/markustest/MK-091130_A5.mzXML.gz* [ > Unreadable! ] > > c:\Inetpub\tpp-bin\massWolf -v --mzXML -z -g > c:/Inetpub/wwwroot/ISB/data/markustest/MK-091130_A5.raw > > ------------------------------ > > Settings: > centroid scans: 0 > compress scans: 1 > verbose mode: 1 > lockspray: 1 > MS^E: 0 > threshold: 0 > force precursor selection from filter line: 0 > mzML mode: 0 > mzXML mode: 1 > > input filename: c:/Inetpub/wwwroot/ISB/data/markustest/MK-091130_A5.raw > output filename: > c:/Inetpub/wwwroot/ISB/data/markustest/MK-091130_A5.mzXML.gz > output file as gzip: 1 > > *Command FAILED* > > > > Running from the command line also did not work. > The strange thing is that this also did not work on anoother PC with a > 32-bit WinXP! Only after re-installing WinXP, it did perform OK in botzh > operating modes: browser and command line. > > > > On Thu, Apr 22, 2010 at 6:31 PM, Natalie Tasman < > [email protected]> wrote: > >> Jacques, >> >> I'm wondering if 64-bit perl installs to C:\Perl64 or something similar, >> rather than the expeted C:\Perl. Can you please check? >> >> Thanks, >> >> Natalie >> >> >> >> On 4/22/10 3:08 AM, Jacques wrote: >> >>> Hi everyone >>> I'm trying to install TPP (TPP_Setup_v4_3_JETSTREAM_rev_1.exe) on an >>> x64 Windows 2003 R3 Terminal Server. >>> Both ActiveState Perl and Perl64 (ActivePerl-5.8.9.827-MSWin32- >>> x86-291969.msi& ActivePerl-5.8.9.827-MSWin32-x64-291969.msi) are >>> installed on the system and Paths are OK. >>> At the end of the TPP setup, the installation script has problems >>> location Perl: >>> I have the the impression the which.exe is somehow buggy... >>> >>> Here the message I get during setup at the cms prompt: >>> ======= >>> a quick check to see if the TPP installation process went OK: >>> checking path... should include "c:\perl\bin;C:\Inetpub\tpp-bin;" >>> OK >>> --- >>> checking perl... should say perl\bin\perl.exe >>> --- >>> perl install looks bad - where is c:\perl\bin\perl.exe? >>> try a reboot >>> Press any key to continue . . . >>> >>> ===== >>> >>> >>> >>> Any idea what i'm doing wrong? >>> Thanks a lot for any help >>> Jacques >>> >>> >>> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To post to this group, send email to [email protected]. >> To unsubscribe from this group, send email to >> [email protected]<spctools-discuss%[email protected]> >> . >> For more options, visit this group at >> http://groups.google.com/group/spctools-discuss?hl=en. >> >> > > > -- > građanin > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
