Hi John, Yes you correct there are some changes to the format that have not been released in a new xsd yet. Thank you for identifying this issue. We will correct this in a future release.
The confidence parameter is a measure similar to that described in States, D.J.et al (2006) Nature Biotechnology 24, 333-338. It is a measure of the likelihood that protein id is not a random event given the probabilities of contributing peptides, taking into account the length of the protein sequence. -David On Fri, Apr 30, 2010 at 11:32 AM, John Damask <[email protected]> wrote: > Hi, > In the most recent Windows release of TPP I see ProteinProphet xml > output references protXml_v6.xsd. However it doesn't appear at the > referenced URL, http://sashimi.sourceforge.net/schema_revision/protXML/ > nor can I find it in my installation. > I'm curious about new schema attributes, e.g. protein "confidence". > Can someone post it to the sashimi page? > > Thanks > John > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
