Hi David, Any idea when we can expect new release...
I am using "TPP_Setup_v4_3_JETSTREAM_rev_1" and have the same issue. Regards Vishal On Fri, Apr 30, 2010 at 7:46 PM, David Shteynberg < [email protected]> wrote: > Hi John, > > Yes you correct there are some changes to the format that have not > been released in a new xsd yet. Thank you for identifying this issue. > We will correct this in a future release. > > The confidence parameter is a measure similar to that described in > States, D.J.et al (2006) Nature Biotechnology 24, 333-338. It is a > measure of the likelihood that protein id is not a random event given > the probabilities of contributing peptides, taking into account the > length of the protein sequence. > > -David > > On Fri, Apr 30, 2010 at 11:32 AM, John Damask <[email protected]> wrote: > > Hi, > > In the most recent Windows release of TPP I see ProteinProphet xml > > output references protXml_v6.xsd. However it doesn't appear at the > > referenced URL, http://sashimi.sourceforge.net/schema_revision/protXML/ > > nor can I find it in my installation. > > I'm curious about new schema attributes, e.g. protein "confidence". > > Can someone post it to the sashimi page? > > > > Thanks > > John > > > > -- > > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > > To post to this group, send email to [email protected]. > > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > > > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
