And if it's not working, just make sure that JAVA_HOME isn't defined
and the build will skip PepC.

-Natalie


On Mon, May 24, 2010 at 9:49 AM, Brian Pratt <brian.pr...@insilicos.com> wrote:
> Hi Oded,
>
> You'll need Java 1.6 - turns out javax.swing.table.TableRowSorter
> isn't in 1.5.  Can you readily upgrade that?
>
> Brian
>
> On Sun, May 23, 2010 at 3:48 AM, Oded <oded.kleif...@gmail.com> wrote:
>> Hi all,
>> I am trying to install the latest TPP code (version 4984) on my Mac
>> that runs 10.5 using fink.
>> All seems to go well but a Java related issue in the build of PepC is
>> causing the following error:
>>    [javac] /Users/oded/tpp4984/src/Quantitation/Pepc/src/
>> PepcViewer.java:52: cannot find symbol
>>    [javac] symbol  : class TableRowSorter
>>    [javac] location: package javax.swing.table
>>    [javac] import javax.swing.table.TableRowSorter;
>>    [javac]                          ^
>>    [javac] /Users/oded/tpp4984/src/Quantitation/Pepc/src/
>> PepcViewer.java:473: cannot find symbol
>>    [javac] symbol  : method setAutoCreateRowSorter(boolean)
>>    [javac] location: class javax.swing.JTable
>>    [javac]
>> proteinsTable.setAutoCreateRowSorter(true);  // sort on col header
>> clicks
>>    [javac]                              ^
>>    [javac] /Users/oded/tpp4984/src/Quantitation/Pepc/src/
>> PepcViewer.java:482: cannot find symbol
>>    [javac] symbol  : class TableRowSorter
>>    [javac] location: class PepcViewer.PepcPanel
>>    [javac]
>> ((TableRowSorter)proteinsTable.getRowSorter()).setComparator(c,dcomp);
>>    [javac]                           ^
>>    [javac] /Users/oded/tpp4984/src/Quantitation/Pepc/src/
>> PepcViewer.java:482: cannot find symbol
>>    [javac] symbol  : method getRowSorter()
>>    [javac] location: class javax.swing.JTable
>>    [javac]
>> ((TableRowSorter)proteinsTable.getRowSorter()).setComparator(c,dcomp);
>>    [javac]                                                       ^
>>    [javac] /Users/oded/tpp4984/src/Quantitation/Pepc/src/
>> PepcViewer.java:486: cannot find symbol
>>    [javac] symbol  : class TableRowSorter
>>    [javac] location: class PepcViewer.PepcPanel
>>    [javac]
>> ((TableRowSorter)proteinsTable.getRowSorter()).setComparator(getGStatisticColumnNum(),dcomp);
>>    [javac]                   ^
>>    [javac] /Users/oded/tpp4984/src/Quantitation/Pepc/src/
>> PepcViewer.java:486: cannot find symbol
>>    [javac] symbol  : method getRowSorter()
>>    [javac] location: class javax.swing.JTable
>>    [javac]
>> ((TableRowSorter)proteinsTable.getRowSorter()).setComparator(getGStatisticColumnNum(),dcomp);
>>    [javac]                                               ^
>>    [javac] /Users/oded/tpp4984/src/Quantitation/Pepc/src/
>> PepcViewer.java:488: cannot find symbol
>>    [javac] symbol  : class TableRowSorter
>>    [javac] location: class PepcViewer.PepcPanel
>>    [javac]
>> ((TableRowSorter)proteinsTable.getRowSorter()).setComparator(getPValueColumnNum(),
>> dcomp);
>>    [javac]                   ^
>>    [javac] /Users/oded/tpp4984/src/Quantitation/Pepc/src/
>> PepcViewer.java:488: cannot find symbol
>>    [javac] symbol  : method getRowSorter()
>>    [javac] location: class javax.swing.JTable
>>    [javac]
>> ((TableRowSorter)proteinsTable.getRowSorter()).setComparator(getPValueColumnNum(),
>> dcomp);
>>    [javac]                                               ^
>>    [javac] Note: /Users/oded/tpp4984/src/Quantitation/Pepc/src/
>> PepcViewer.java uses unchecked or unsafe operations.
>>    [javac] Note: Recompile with -Xlint:unchecked for details.
>>    [javac] 8 errors
>>
>> BUILD FAILED
>>
>> The Java build is 1.5.0_24-149 (OS 10.5)
>> Is there a way to sort this issue?
>> Many thanks,
>> Oded
>>
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