Hello all I noticed when I used PeptideProphet on Phenyx results (exported as pepxml) that there is a warning issued by TPP that the Phenyx fvalue calculation is new and untested/unreliable. Is there any way to force PeptideProphet to use native db search scores and not fvalues?
Thanks, MattK using TPP v4.3 JETSTREAM rev 0, Build 200908071234 (MinGW) -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
