>> I know I could cat the different files but these are symbolink links >> to the Mascot FASTA files which are automatically updated.
One could make the case that making a copy of the database(s) for TPP purposes is the right thing to do anyway. The database and the search result should travel together - when the database changes the result loses meaning. On Thu, Jun 24, 2010 at 2:22 AM, Alex <[email protected]> wrote: > Good morning Seattle, > > Hope everyone is doing fine :O > > We upgraded to Mascot 2.3 which has the new option of searching > multiple databases. It is a nice option but if such search is done, > how do we deal with the conversion of DAT to pepXML using Mascot2XML ? > To my knowledge, only a single fasta file can be inputted for the > conversion. Could someone add the option of multiple FASTA file to be > compatible with 2.3 ? > > I know I could cat the different files but these are symbolink links > to the Mascot FASTA files which are automatically updated. > > As well it would be nice to have a way to use taxonomy. For example > when you search UniProtKB Trembl with taxonomy in Mascot, when > converting it would be helpful to input the same taxonomy. Or input in > xinteract. Or maybe I'm wrong and the option does exist. > > Cheers, > Alex > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
