You can use any prefix as long as it's consistent (and obviously unique and not present in the target database entries). In the tools, you will specify what prefix denotes the decoy entries. Like "REV" or "### "or "###REV###" ...
On Tue, Jun 29, 2010 at 7:23 PM, Simon Michnowicz <[email protected]> wrote: > Dear Group, > I am trying to create a decoy database for use in the TPP pipeline. > I downloaded a Perl Script from Matrix Science, and noticed it put > entries like : > ###REV### > ###RND### > in Accession identifiers. However whilst looking at ISB slides noticed > that the Accession identifiers > are mentioned to be of the form “REV0” or “REV1”.‘REV’ > > Is placing "REV' at the start of the protein name the standard way > of formatting Accession identifiers for use with the ISB tools (i.e. > protein prophet)? > > thanks > Simon Michnowicz > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
