Thanks! It worked! Cool! I used a different fraction, and tried several numbers for N (i.e., 50, 100, 150, 200, 300, 400, 500, 800, 1000).
The results are listed as: N number (# of identified proteins / # of peptide matches above identity threshold / # of peptide matches above homology or identity threshold) The search done by pkl (generated by PLGS) gives result ( 69/ 201/ 210). The ones done by mgf (by MzXML2Search) give results: (there are 4436 scans in this data) N = 50, ( 45/ 99/ 115) N = 100, ( 49/ 107/ 118) N = 150, ( 51/ 114/ 126) N = 200, ( 49/ 114/ 126) N = 300, ( 51/ 125/ 130) N = 400, ( 50/ 129/ 134) N = 500, ( 53/ 130/ 135) N = 800, ( 56/ 133/ 137) N = 1000, ( 56/ 134/ 139) Jing -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-disc...@googlegroups.com. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
