Hi Jesse, All ProteoWizard tools and clients can read/write the decent open formats on any platform: http://proteowizard.sourceforge.net/technical/formats/index.html PKL, DTA, and mzData (which is cursed by dialect issues) are the only missing formats I'm aware of.
-Matt On 7/7/2010 1:24 PM, Jesse J wrote:
mzML is the new format that should be used, but I haven't seen any programs out there that will convert mzML into mgf and ms2, like MzXML2Search does with mzXML. With some help from my professor, I've expanded ms-msrun to support mzML and thus be able to convert mzML into mgf or ms2, but I'm curious: is there any other program out there that does this?
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