Unfortunately, charge state information is not available in the RAW data, so charge state would be a post-processing step. There is also no vendor-provided
peak picking, so any centroiding has to be post-processing as well. Waters's best solution for this is the not-free ProteinLynx Global Server (PLGS) which does
both charge state determination and centroiding. MassLynx itself can do some denoising and peak picking, but not charge state inference IIRC.
There may be some good post-processing tools for inferring charge state and centroiding out there, but I'm not aware of ones that that both do a good job AND
read mz[X]ML AND write mz[X]ML. Perhaps someone else can clue me in on that.
-Matt
On 7/13/2010 3:57 PM, Joo wrote:
I have a Q-TOF dataset
I converted .RAW files to mzXML using massWolf_2006Nov06
I got mzXML but it does not contains charge state, and the peaks do
not seem to be cetroided peaks,,,
I need deisotoped, centroided peak list
Is there any option that does deisotoping and centroiding in massWolf?
if not, is there any other software that could convert Q-Tof .RAW file
to mzXML file
I need help~
--
You received this message because you are subscribed to the Google Groups
"spctools-discuss" group.
To post to this group, send email to [email protected].
To unsubscribe from this group, send email to
[email protected].
For more options, visit this group at
http://groups.google.com/group/spctools-discuss?hl=en.
