I believe you could use OpenMS to post-process your mzML files. cheers, alex
On Jul 14, 7:49 pm, Matthew Chambers <[email protected]> wrote: > Unfortunately, charge state information is not available in the RAW data, > so charge state would be a post-processing step. There is also no > vendor-provided > peak picking, so any centroiding has to be post-processing as well. Waters's > best solution for this is the not-free ProteinLynx Global Server (PLGS) which > does > both charge state determination and centroiding. MassLynx itself can do some > denoising and peak picking, but not charge state inference IIRC. > > There may be some good post-processing tools for inferring charge state and > centroiding out there, but I'm not aware of ones that that both do a good job > AND > read mz[X]ML AND write mz[X]ML. Perhaps someone else can clue me in on that. > > -Matt > > On 7/13/2010 3:57 PM, Joo wrote: > > > > > I have a Q-TOF dataset > > I converted .RAW files to mzXML using massWolf_2006Nov06 > > I got mzXML but it does not contains charge state, and the peaks do > > not seem to be cetroided peaks,,, > > I need deisotoped, centroided peak list > > Is there any option that does deisotoping and centroiding in massWolf? > > if not, is there any other software that could convert Q-Tof .RAW file > > to mzXML file > > I need help~ -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
