Hi, Still the error... I changed the file name and did the tandem search again. Then convert to pep.xml. when I open the file, I still get this error, but I get a list of hits: Unable to access xml file via webserver, so cannot check xml file for changes () Check webserver configuration if desired. (URL: undefined)
Then, - clicking on the ST letters in the first column gives this: Auto-Post Spectrum for SpectraST Search at PeptideAtlas Attempting to retrieve dta file for submission to SpectraST... There was a problem processing your request: Error - scan 0 is not an MS/MS scan in the mzXML file /Library/ WebServer/Documents/thegpm/tpp/data/P01070/100805.LC2.IT2.XX.P01070_2- A.10_01_805.mzXML - clicking on the ions gives this: command "gnuplot /Library/WebServer/Documents/thegpm/tpp/data/ P01070/100805.LC2.IT2.XX.P01070_2-A.10_01_805.1968396360.gp" failed with exit code 256 SCEPIR, MH+ 704.3401, m/z 352.6737 100805.LC2.IT2.XX.P01070_2-A.10_01_805.00002.00002.2.dta Bjorn On Aug 25, 1:28 am, Natalie Tasman <[email protected]> wrote: > Hi Bjorn, > > Looking at the error, I see that somehow it looks like you have a > comma-character in the filename > > 100805.LC2.IT2.XX.P01070_2-A,10_01_805.1940848714.gp > ^ > > Please rename without this illegal character, try your analysis again, > and let us know. > > -Natalie > > > > On Tue, Aug 24, 2010 at 3:32 PM, Bjorn <[email protected]> wrote: > > Hi all, > > > I have installed the TPP on my mac and I am trying to use it. > > - I have a problem with gnuplot: I get no output: > > command "gnuplot Library/WebServer/Documents/thegpm/tpp/data/ > > 100805.LC2.IT2.XX.P01070_2-A,10_01_805.1940848714.gp" > > failed with exit code 256 CGPLCR, MH+ 705.3176, m/z 353.1624 > > 100805.LC2.IT2.XX.P01070_2-A,10_01_805.00002.00002.2.dta > > > What is that .gp file? Where is that file saved? > > > - I have a "Unable to access xml file via webserver, so cannot check > > xml file for changes () > > " error message when trying this : > >http://192.168.1.34/tpp/cgi-bin/PepXMLViewer.cgi?xmlFileName=/Library... > > > - in pepXMLviewer, I can click on filtering options, but when I enter > > text in the required protein text (regex allowed) field, I go from all > > results to 0 results, although I'm sure the text is there! > > > Any help would be much appreciated! > > > bjorn > > > -- > > You received this message because you are subscribed to the Google Groups > > "spctools-discuss" group. > > To post to this group, send email to [email protected]. > > To unsubscribe from this group, send email to > > [email protected]. > > For more options, visit this group > > athttp://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
