spctools-discuss

Messages by Date

2014/10/15 Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge 李桂林
2014/10/15 Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge 李桂林
2014/10/15 Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge David Shteynberg
2014/10/15 [spctools-discuss] Re: Encoded charge does not match the assumed_charge 李桂林
2014/10/15 [spctools-discuss] Encoded charge does not match the assumed_charge 李桂林
2014/10/10 Re: [spctools-discuss] Export to .xls from command line 钟传奇
2014/10/10 [spctools-discuss] Re: Export to .xls from command line Adam Oberstein
2014/10/10 Re: [spctools-discuss] How to process MS3 Data from Orbitrap Fusion? Will Fondrie
2014/10/09 [spctools-discuss] Re: Export to .xls from command line Adam Oberstein
2014/10/08 Re: [spctools-discuss] iTRAQ data through xtandem! using TPP Frédéric DELOLME
2014/10/07 Re: [spctools-discuss] Mascot2XML - no enzyme Jimmy Eng
2014/10/07 [spctools-discuss] Mascot2XML - no enzyme Vishal Swaroop
2014/10/07 Re: [spctools-discuss] How to process MS3 Data from Orbitrap Fusion? Will Fondrie
2014/10/07 Re: [spctools-discuss] X!tandem error zeyu sun
2014/10/06 Re: [spctools-discuss] X!tandem error Brian Hampton
2014/10/06 [spctools-discuss] Tools for ms1 search using mass, retention time and isotopic pattern David Zhao
2014/10/06 [spctools-discuss] problem of PeptideProphetParser for large dataset zeyu sun
2014/10/06 Re: [spctools-discuss] X!tandem error zeyu sun
2014/10/06 [spctools-discuss] OMSSA and iprophet zeyu sun
2014/10/06 RE: [spctools-discuss] X!tandem error Eric Deutsch
2014/10/06 Re: [spctools-discuss] X!tandem error zeyu sun
2014/10/05 Re: [spctools-discuss] X!tandem error Jimmy Eng
2014/10/05 [spctools-discuss] X!tandem error zeyu sun
2014/10/03 Re: [spctools-discuss] How to process MS3 Data from Orbitrap Fusion? Jimmy Eng
2014/10/03 [spctools-discuss] How to process MS3 Data from Orbitrap Fusion? Will Fondrie
2014/10/03 [spctools-discuss] FWD: Deprecated CGI endform in tpp_gui.pl caused centos install to fail Joseph Slagel
2014/10/01 Re: [spctools-discuss] Re: TPP 4.7.0 installation problems on Ubuntu 14.04 Brian Hampton
2014/09/30 [spctools-discuss] why peptideprophet model fails for 2+ peptides? Ulrich Omasits
2014/09/22 Re: [spctools-discuss] iTRAQ data through xtandem! using TPP Alberto Labarga
2014/09/19 [spctools-discuss] peptide probability filtering Kirill Borziak
2014/09/15 Re: [spctools-discuss] PTM prophet and DiMethylation [email protected]
2014/09/04 Re: [spctools-discuss] Wiff file conversion to mzML 钟传奇
2014/09/03 Re: [spctools-discuss] Problems converting wiff files to mzML Jana Horáková
2014/09/03 Re: [spctools-discuss] Problems converting wiff files to mzML Robert Winkler
2014/09/03 [spctools-discuss] Problems converting wiff files to mzML Jana Horáková
2014/09/03 [spctools-discuss] Wiff file conversion to mzML Jana Horáková
2014/08/29 [spctools-discuss] Re: Libra condition.xml syntax Konstantinos Vougas
2014/08/28 Re: [spctools-discuss] Libra condition.xml syntax Luis Mendoza
2014/08/28 [spctools-discuss] Libra condition.xml syntax Konstantinos Vougas
2014/08/26 Re: [spctools-discuss] PTM prophet and DiMethylation David Shteynberg
2014/08/26 Re: [spctools-discuss] PTM prophet and DiMethylation David Shteynberg
2014/08/26 [spctools-discuss] Semi-empirical spectra generation: single aa substitution Jelena Chuklina
2014/08/22 [spctools-discuss] Sequest search question David Zhao
2014/08/22 [spctools-discuss] Should I use discriminant score or expect value for PTM modeling for comet search results David Zhao
2014/08/21 Re: [spctools-discuss] TTP Libra for iTRAQ quantification SS
2014/08/19 [spctools-discuss] Re: Multiple lysine modifications and quantification Jesse
2014/08/15 [spctools-discuss] Re: Export to .xls from command line Adam Oberstein
2014/08/15 [spctools-discuss] Re: Export to .xls from command line Jason Winget
2014/08/15 Re: [spctools-discuss] Export to .xls from command line 钟传奇
2014/08/15 Re: [spctools-discuss] Export to .xls from command line 钟传奇
2014/08/14 Re: [spctools-discuss] TTP Libra for iTRAQ quantification Luis Mendoza
2014/08/14 Re: [spctools-discuss] Export to .xls from command line Luis Mendoza
2014/08/14 Re: [spctools-discuss] TTP Libra for iTRAQ quantification SS
2014/08/14 Re: [spctools-discuss] Generation of mzIdentML from TPP results Joseph Slagel
2014/08/12 Re: [spctools-discuss] PTM prophet and DiMethylation Jesse Meyer
2014/08/12 Re: [spctools-discuss] PTM prophet and DiMethylation David Shteynberg
2014/08/12 Re: [spctools-discuss] PTM prophet and DiMethylation Jesse Meyer
2014/08/12 Re: [spctools-discuss] Export to .xls from command line 钟传奇
2014/08/11 [spctools-discuss] Export to .xls from command line Adam Oberstein
2014/08/08 [spctools-discuss] Re: How to fix message NOCMDFILE Marianne Brannon
2014/08/06 [spctools-discuss] TPP 4.7 error when performing data search (following tutorial) Jelena Chuklina
2014/08/04 Re: [spctools-discuss] X!Tandem searches take too long Joseph Slagel
2014/08/04 [spctools-discuss] How to fix message NOCMDFILE Marianne Brannon
2014/08/03 [spctools-discuss] How to set iprobility value cutoff input for proteinprophet? 钟传奇
2014/08/01 Re: [spctools-discuss] X!Tandem searches take too long Marianne Brannon
2014/07/31 Re: [spctools-discuss] X!Tandem searches take too long Joseph Slagel
2014/07/31 [spctools-discuss] X!Tandem searches take too long Marianne Brannon
2014/07/28 [spctools-discuss] Re: Possible Bug in TPP 4.7.1 [email protected]
2014/07/28 [spctools-discuss] Re: Possible Bug in TPP 4.7.1 dsimpson3
2014/07/27 [spctools-discuss] Attempted to access forbidden directory SURUCHI AGGARWAL
2014/07/25 [spctools-discuss] Possible Bug in TPP 4.7.1 dsimpson3
2014/07/23 [spctools-discuss] Re: TPP translation code is wrong. Rachel
2014/07/22 Re: [spctools-discuss] TPP translation code is wrong. Jimmy Eng
2014/07/22 Re: [spctools-discuss] TPP translation code is wrong. Luis Mendoza
2014/07/22 Re: [spctools-discuss] Tandem2XML problem (RETURN CODE:768) Luis Mendoza
2014/07/18 Re: [spctools-discuss] Re: Base peak intensity values not reported in pepxml files Brian Hampton
2014/07/17 Re: [spctools-discuss] Re: Base peak intensity values not reported in pepxml files Jimmy Eng
2014/07/17 Re: [spctools-discuss] Re: Base peak intensity values not reported in pepxml files Brian Hampton
2014/07/17 [spctools-discuss] Re: Base peak intensity values not reported in pepxml files Jason Winget
2014/07/16 [spctools-discuss] ASAPRatio Problem Shadab Ahmad
2014/07/16 [spctools-discuss] Base peak intensity values not reported in pepxml files Brian Hampton
2014/07/15 [spctools-discuss] Re: Spectrast Tier-Wise Scoring Henry Lam
2014/07/13 [spctools-discuss] Tandem2XML problem (RETURN CODE:768) zeyu sun
2014/07/12 Re: [spctools-discuss] PTM prophet and DiMethylation [email protected]
2014/07/11 Re: [spctools-discuss] PTM prophet and DiMethylation David Shteynberg
2014/07/07 Re: [spctools-discuss] ASAPRatio, not using massdiff properly for chemical isotopic labeling? David Shteynberg
2014/07/07 [spctools-discuss] ProteinProphet crashes by an unknown reason Lee, Joungmin
2014/07/07 [spctools-discuss] ProteinProphet crashes Lee, Joungmin
2014/07/07 [spctools-discuss] ASAPRatio problem update - is fixed in TPP 4.7.1 ! Brian Hampton
2014/07/06 [spctools-discuss] ASAPRatio, not using massdiff properly for chemical isotopic labeling? Brian Hampton
2014/07/04 Re: [spctools-discuss] HOW to get the "Specify Tandem Parameters File"?~~~help~~~ jason cao
2014/07/04 Re: [spctools-discuss] HOW to get the "Specify Tandem Parameters File"?~~~help~~~ 钟传奇
2014/07/03 [spctools-discuss] HOW to get the "Specify Tandem Parameters File"?~~~help~~~ jason cao
2014/07/03 [spctools-discuss] what is "Specify Tandem Parameters File"!!!! jason cao
2014/07/03 [spctools-discuss] how to creat a " Specify Tandem Parameters File "!!!!!!!! hurry~~~help jason cao
2014/07/02 Re: [spctools-discuss] [PeptideProphet] limitation of input file size? User
2014/07/02 Re: [spctools-discuss] [PeptideProphet] limitation of input file size? Joseph Slagel
2014/07/02 Re: [spctools-discuss] [PeptideProphet] limitation of input file size? User
2014/07/02 Re: [spctools-discuss] [PeptideProphet] limitation of input file size? Joseph Slagel
2014/07/02 [spctools-discuss] [PeptideProphet] limitation of input file size? User
2014/07/01 [spctools-discuss] [PeptideProphet_Mascot] Runtime to terminate it in an unusual way. User
2014/07/01 [spctools-discuss] PTM prophet and DiMethylation Oded
2014/06/30 [spctools-discuss] TPP translation code is wrong. Rachel
2014/06/26 Re: [spctools-discuss] PeptideProphet Libra analysis return code 65280 Luis Mendoza
2014/06/24 Re: [spctools-discuss] Re: TPP 4.7.0 installation problems on Ubuntu 14.04 Joseph Slagel
2014/06/24 Re: [spctools-discuss] Re: TPP 4.7.0 installation problems on Ubuntu 14.04 Robert Winkler
2014/06/23 Re: [spctools-discuss] Re: TPP 4.7.0 installation problems on Ubuntu 14.04 Joseph Slagel
2014/06/23 [spctools-discuss] Re: TPP 4.7.0 installation problems on Ubuntu 14.04 Robert
2014/06/23 [spctools-discuss] PeptideProphet Libra analysis return code 65280 Chloe Chien
2014/06/23 Re: [spctools-discuss] Generation of mzIdentML from TPP results Robert Winkler
2014/06/23 Re: [spctools-discuss] Generation of mzIdentML from TPP results Joseph Slagel
2014/06/23 [spctools-discuss] Generation of mzIdentML from TPP results Robert
2014/06/19 Re: [spctools-discuss] peptide prophet "read in no data" David Shteynberg
2014/06/18 RE: [spctools-discuss] peptide prophet "read in no data" Eric Deutsch
2014/06/18 Re: [spctools-discuss] peptide prophet "read in no data" delphine wood
2014/06/17 Re: [spctools-discuss] peptide prophet "read in no data" David Shteynberg
2014/06/17 Re: [spctools-discuss] peptide prophet "read in no data" David Shteynberg
2014/06/17 [spctools-discuss] peptide prophet "read in no data" Delphine
2014/06/15 [spctools-discuss] TPP @ ASMS -- booth # 5 Luis Mendoza
2014/06/13 Re: Fwd: [spctools-discuss] Thermo fusion data process Chambers, Matthew
2014/06/13 Fwd: [spctools-discuss] Thermo fusion data process Hannes Röst
2014/06/11 [spctools-discuss] Thermo fusion data process zhangchengpu0203
2014/06/11 [spctools-discuss] Re: New tool to convert Proteome Discoverer (1.3 and above) MSF file(s) to the mzIdentML 1.1.0, pepXML and tabs-delimited-text format file(s) apauls
2014/06/10 [spctools-discuss] Re: New tool to convert Proteome Discoverer (1.3 and above) MSF file(s) to the mzIdentML 1.1.0, pepXML and tabs-delimited-text format file(s) Delphine
2014/06/05 Re: [spctools-discuss] core dumped running PeptideProphet, TPP 4.7.1 AMI David Shteynberg
2014/06/05 Re: [spctools-discuss] core dumped running PeptideProphet, TPP 4.7.1 AMI Krystalle S. Diaz
2014/06/05 Re: [spctools-discuss] core dumped running PeptideProphet, TPP 4.7.1 AMI Krystalle S. Diaz
2014/06/05 Re: [spctools-discuss] core dumped running PeptideProphet, TPP 4.7.1 AMI David Shteynberg
2014/06/05 [spctools-discuss] core dumped running PeptideProphet, TPP 4.7.1 AMI Krystalle S. Diaz
2014/06/05 [spctools-discuss] How to do Differential protein expression (DPE) analysis using Spectral counts (PSMs) for the whole bacterial proteome? Margarita Andreevskaya
2014/06/04 [spctools-discuss] Unknown data type when running Peptide Analysis Jorey Dong
2014/06/04 [spctools-discuss] Spectrast Tier-Wise Scoring Chris
2014/06/04 Re: [spctools-discuss] PTMProphet workflow David Shteynberg
2014/06/04 Re: [spctools-discuss] Parallel InterProphet versus Combined InterProphet Chris
2014/06/04 Re: [spctools-discuss] PTMProphet workflow Chris
2014/06/04 Re: [spctools-discuss] Parallel InterProphet versus Combined InterProphet David Shteynberg
2014/06/04 Re: [spctools-discuss] PTMProphet workflow David Shteynberg
2014/06/04 [spctools-discuss] New tool to convert Proteome Discoverer (1.3 and above) MSF file(s) to the mzIdentML 1.1.0, pepXML and tabs-delimited-text format file(s) Paul Aiyetan
2014/06/04 [spctools-discuss] PTMProphet workflow Chris
2014/06/04 [spctools-discuss] Parallel InterProphet versus Combined InterProphet Chris
2014/06/03 Re: [spctools-discuss] Client management in TPP Brian Hampton
2014/06/03 [spctools-discuss] Client management in TPP Sebastian Wiese
2014/05/28 Re: [spctools-discuss] SpectraST Hannes Röst
2014/05/28 Re: [spctools-discuss] TPP running on Live DVD/USB: v4.7 installed on MASSyPup Robert
2014/05/28 [spctools-discuss] SpectraST Krishan Kumar
2014/05/23 Re: [spctools-discuss] Re: How to use the TPP pipline with sequest searched results in html format Goran Mitulović
2014/05/23 [spctools-discuss] Re: How to use the TPP pipline with sequest searched results in html format Aprajita Gupta
2014/05/21 [spctools-discuss] Next TPP course Sep 30 - Oct 3 in Madrid, Spain: pre-registration is open! Eric Deutsch
2014/05/21 Re: [spctools-discuss] A question about Mayu. David Shteynberg
2014/05/21 Re: [spctools-discuss] A question about Mayu. 钟传奇
2014/05/21 Re: [spctools-discuss] A question about Mayu. David Shteynberg
2014/05/20 [spctools-discuss] A question about Mayu. 钟传奇
2014/05/20 [spctools-discuss] Re: TPP 4.7.0 installation problems on Ubuntu 14.04 ChargedPeptide
2014/05/19 Re: [spctools-discuss] TPP-4.7 Mac OS X - PepXMLViewer - memory leakage Ulrich auf dem Keller
2014/05/19 Re: [spctools-discuss] TPP running on Live DVD/USB: v4.7 installed on MASSyPup Robert Winkler
2014/05/17 Re: [spctools-discuss] TTP Libra for iTRAQ quantification Bo
2014/05/17 Re: [spctools-discuss] TTP Libra for iTRAQ quantification Luis Mendoza
2014/05/17 [spctools-discuss] TTP Libra for iTRAQ quantification Bo
2014/05/15 Re: [spctools-discuss] TPP mixture model failing Luis Mendoza
2014/05/15 Re: [spctools-discuss] TPP 4.7.0 installation problems on Ubuntu 14.04 Will Fondrie
2014/05/15 Re: [spctools-discuss] TPP running on Live DVD/USB: v4.7 installed on MASSyPup Robert
2014/05/15 [spctools-discuss] TPP 4.7.1 Release is now available Joseph Slagel
2014/05/14 Re: [spctools-discuss] date instead of file name in after dat 2 pepxml Luis Mendoza
2014/05/14 Re: [spctools-discuss] Re: Unable to do PeptideProphet in bulk Kate Mostovenko
2014/05/14 Re: [spctools-discuss] TPP running on Live DVD/USB: v4.7 installed on MASSyPup Luis Mendoza
2014/05/14 Re: [spctools-discuss] Re: Unable to do PeptideProphet in bulk Luis Mendoza
2014/05/14 Re: [spctools-discuss] TPP-4.7 Mac OS X - PepXMLViewer - memory leakage Luis Mendoza
2014/05/14 Re: [spctools-discuss] TPP 4.7.0 installation problems on Ubuntu 14.04 Will Fondrie
2014/05/13 Re: [spctools-discuss] TPP 4.7.0 installation problems on Ubuntu 14.04 Joseph Slagel
2014/05/12 [spctools-discuss] qualscore Philipp Lange
2014/05/12 [spctools-discuss] TPP 4.7.0 installation problems on Ubuntu 14.04 Will Fondrie
2014/05/08 Re: [spctools-discuss] idconverter (prot/pepxml to mzid): Problems with TPP wlstraube
2014/05/08 Re: [spctools-discuss] idconverter (prot/pepxml to mzid): Problems with TPP George Rosenberger
2014/05/06 [spctools-discuss] Constructing a synthetic 13C or 15N SpetraST library. Vadim Patsalo
2014/05/05 [spctools-discuss] Re: FDR calculation in TPP Bo
2014/05/05 Re: [spctools-discuss] Re: FDR calculation in TPP Bo
2014/05/01 Re: [spctools-discuss] Re: FDR calculation in TPP David Shteynberg
2014/05/01 [spctools-discuss] Re: FDR calculation in TPP Bjorn
2014/04/29 Re: [spctools-discuss] Definition of the N-glyco model David Shteynberg
2014/04/29 [spctools-discuss] Definition of the N-glyco model Ruby
2014/04/29 Re: [spctools-discuss] TPP translation code Jimmy Eng
2014/04/29 [spctools-discuss] Tandem2XML warning message - WARNING: Multiple variable modifications on Q for scan 6605. wlstraube
2014/04/29 Re: [spctools-discuss] TPP translation code Hannes Röst
2014/04/28 [spctools-discuss] TPP translation code Rachel
2014/04/28 Re: [spctools-discuss] FDR calculation in TPP Hannes Röst
2014/04/27 [spctools-discuss] Extract UV data Eva B
2014/04/24 Re: [spctools-discuss] ROC figure problem Bo
2014/04/24 Re: [spctools-discuss] ROC figure problem Bo
2014/04/24 Re: [spctools-discuss] ROC figure problem David Shteynberg
2014/04/24 [spctools-discuss] ROC figure problem Bo
2014/04/24 [spctools-discuss] Can XInteract export XML result with FDR at unique peptide level? 李桂林
2014/04/24 [spctools-discuss] FDR calculation in TPP Bo
2014/04/22 Re: [spctools-discuss] X!Tandem search using Petunia in Windows Will Fondrie
2014/04/22 Re: [spctools-discuss] label-free quantification Hannes Röst
2014/04/21 Re: [spctools-discuss] label-free quantification Punit Kadimi
2014/04/21 [spctools-discuss] label-free quantification Rachel
2014/04/19 Re: [spctools-discuss] X!Tandem search using Petunia in Windows David Shteynberg
2014/04/19 Re: [spctools-discuss] Peptides identified without the fixed modification C57 - carbamidomethylation David Shteynberg
2014/04/18 [spctools-discuss] X!Tandem search using Petunia in Windows Will Fondrie
2014/04/18 [spctools-discuss] Peptides identified without the fixed modification C57 - carbamidomethylation Ruby