Hi, I can do a tandem database search that results in a .tandem file. I successfully convert it into a .tandem.pep.xml where I clearly see that I have 2+ and 3+ spectra with hyperscores of +700. When I run peptideprophet on that file, the result is a .pep.xml file with only the 1+ left (no 2+ or 3+) Where have all the good spectra I had before Xinteract gone?? I would expect those to be still there and have high probability scores...
Any suggestion is welcome. I'm using TPP 4.4.0 on Mac OS X 10.6.4. Bjorn -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
