dear list, when trying to run xinteract on some pep.xml files generated with spectrast i run quite often in an NAN probability density error:
xinteract -N/cluster/scratch/malars/pgrade/PS_TPP_develop_280/PSet_39/collector/LIB/spectrast_xinteract/Spectrast_Xinteract.pep.xml -OAlIw /cluster/scratch/malars/pgrade/PS_TPP_develop_280/PSet_39/collector/LIB/spectraST/spectrastlib_raw/aquandt_M1002_191.pep.xml /cluster/scratch/malars/pgrade/PS_TPP_develop_280/PSet_39/collector/LIB/spectraST/spectrastlib_raw/aquandt_M1002_192.pep.xml /cluster/scratch/malars/pgrade/PS_TPP_develop_280/PSet_39/collector/LIB/spectraST/spectrastlib_raw/aquandt_M1002_194.pep.xml /cluster/scratch/malars/pgrade/PS_TPP_develop_280/PSet_39/collector/LIB/spectraST/spectrastlib_raw/aquandt_M1002_195.pep.xml xinteract (TPP v4.4 VUVUZELA rev 0, Build 201008252227 (linux)) running: "/cluster/apps/tpp/4.4.0/bin/InteractParser '/cluster/scratch/malars/pgrade/PS_TPP_develop_280/PSet_39/collector/LIB/spectrast_xinteract/Spectrast_Xinteract.pep.xml' '/cluster/scratch/malars/pgrade/PS_TPP_develop_280/PSet_39/collector/LIB/spectraST/spectrastlib_raw/aquandt_M1002_191.pep.xml' '/cluster/scratch/malars/pgrade/PS_TPP_develop_280/PSet_39/collector/LIB/spectraST/spectrastlib_raw/aquandt_M1002_192.pep.xml' '/cluster/scratch/malars/pgrade/PS_TPP_develop_280/PSet_39/collector/LIB/spectraST/spectrastlib_raw/aquandt_M1002_194.pep.xml' '/cluster/scratch/malars/pgrade/PS_TPP_develop_280/PSet_39/collector/LIB/spectraST/spectrastlib_raw/aquandt_M1002_195.pep.xml' -L'7'" file 1: /cluster/scratch/malars/pgrade/PS_TPP_develop_280/PSet_39/collector/LIB/spectraST/spectrastlib_raw/aquandt_M1002_191.pep.xml file 2: /cluster/scratch/malars/pgrade/PS_TPP_develop_280/PSet_39/collector/LIB/spectraST/spectrastlib_raw/aquandt_M1002_192.pep.xml file 3: /cluster/scratch/malars/pgrade/PS_TPP_develop_280/PSet_39/collector/LIB/spectraST/spectrastlib_raw/aquandt_M1002_194.pep.xml file 4: /cluster/scratch/malars/pgrade/PS_TPP_develop_280/PSet_39/collector/LIB/spectraST/spectrastlib_raw/aquandt_M1002_195.pep.xml processed altogether 50145 results results written to file /cluster/scratch/malars/pgrade/PS_TPP_develop_280/PSet_39/collector/LIB/spectrast_xinteract/Spectrast_Xinteract.pep.shtml command completed in 27 sec running: "/cluster/apps/tpp/4.4.0/bin/PeptideProphetParser '/cluster/scratch/malars/pgrade/PS_TPP_develop_280/PSet_39/collector/LIB/spectrast_xinteract/Spectrast_Xinteract.pep.xml' ACCMASS LEAVE PI INSTRWARN" using Accurate Mass Bins using pI Using no error on different instrument types. (SpectraST) adding Accurate Mass mixture distr adding pI mixture distr init with SpectraST trypsin MS Instrument info: Manufacturer: Thermo Scientific, Model: LTQ Orbitrap XL, Ionization: nanoelectrospray, Analyzer: orbitrap, Detector: inductive detector PeptideProphet (TPP v4.4 VUVUZELA rev 0, Build 201008252227 (linux)) akel...@isb read in 0 1+, 45779 2+, 4366 3+, 0 4+, 0 5+, 0 6+, and 0 7+ spectra. Initialising statistical models ... Iterations: .........10.........20.........30.ERROR: NAN probability density detected. Please alert the developer !!! ERROR: NAN probability density detected. Please alert the developer !!! ERROR: NAN probability density detected. Please alert the developer !!! ERROR: NAN probability density detected. Please alert the developer !!! ERROR: NAN probability density detected. Please alert the developer !!! ERROR: NAN probability density detected. Please alert the developer !!! ERROR: NAN probability density detected. Please alert the developer !!! ERROR: NAN probability density detected. Please alert the developer !!! ERROR: NAN probability density detected. Please alert the developer !!! ERROR: NAN probability density detected. Please alert the developer !!! ERROR: NAN probability density detected. Please alert the developer !!! ERROR: NAN probability density detected. Please alert the developer !!! ERROR: NAN probability density detected. Please alert the developer !!! ERROR: NAN probability density detected. Please alert the developer !!! ERROR: NAN probability density detected. Please alert the developer !!! does anyone has an idea what causes this? many thanks in advance, andreas -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
