For any folks using XPRESS with the 4.4 release of TPP, I was recently notified of a bug which I validated is present. A fix has been made and is being tested. I would suggest not using this particular version of the tool until the next maintenance release is out; revert to the 4.3.1 binary if you need to quantify data with XPRESS in the near term (replace XPressPeptideParser.exe binary). The error manifests itself in a lot of ratios not being calculated and being reported as -1.0.
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