Hi David, Thank you very much!
Rachel :) On Sep 30, 2:46 am, David Shteynberg <[email protected]> wrote: > Hi Rachel, > > It is limited only by the amout of memory you have on your system. > The memory req scales linearly with number of spectra being combined. > Obviously the more spectra that are analysed together the better the > statistics are going to be, but this too has a practical limit. Once > you have the individual iProphet pepxmls you should not run iProphet > on them again since you'll run into the same memory issue. Instead > this is a perfect time to run ProteinProphet on the iProphet files and > specify the IPROPHET option to make sure it uses iProphet > probabilities. > > -David > > > > On Tue, Sep 28, 2010 at 7:23 PM, Rachel <[email protected]> wrote: > > 1. I tried to combine large number of files (~1000) using iprophet. I > > tried using command line as well as the tpp-gui. but failed. > > The error message is, > > This application has requested the runtime to terminate in an unusual > > way. Please contact the application's team for more information. > > > 2. Then I split the 1000 files into 12 batches and combine the > > peptideprophet of these files using iprophet. Then I tried to combine > > these 12 large iprophet files in iprophet, also failed. I got the same > > error message. > > > Is anyone know the limit of iProphet? > > > thanks a lot. > > > -- > > You received this message because you are subscribed to the Google Groups > > "spctools-discuss" group. > > To post to this group, send email to [email protected]. > > To unsubscribe from this group, send email to > > [email protected]. > > For more options, visit this group > > athttp://groups.google.com/group/spctools-discuss?hl=en.- Hide quoted text - > > - Show quoted text - -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
