Hello, I'm using ubuntu 10.04 and installed TPP 4.3.1 according to the installation instructions (http://tools.proteomecenter.org/wiki/ index.php?title=TPP_4.3.1:_Installing_on_Ubuntu_10.04).
The information I found concerning the GUI seemed to cover only Windows-systems (http://tools.proteomecenter.org/wiki/index.php? title=TPP:Using_Petunia), so I decided to use the command line when using TPP. I ran tandem.exe, as well as Tandem2XML (for converting the tandem output to pepXML) but encountered problems when trying to read the pepXML-file. In the end, I basically want to extract only the hyperscore of PSMs into a separate file (and some other similar stuff). 1. Can I use the PepXML Viewer using Linux? And naturally, how do I start it? (Haven't found any documentation) 2. Would it be easier to extract the data I want from pepXML using XSLT? (In that case, as I'm a beginner with xml, do I need to define a specific name space in the beginning of the xslt stylesheet?) Thank you very much in advance! /Viktor -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
