Dear All, I havn't received my presvious message myself as the memeber of this group and hence i am here with sending once again.
Soory for the inconvinience if you already received my previous message. Here is my previous message: ======================= On Thu, Nov 4, 2010 at 5:06 PM, Jagan Kommineni <[email protected]>wrote: > Dear All, > > I would like to view the OMSSA results with pepXMLViewer as there some > compatibility issues with the latest version of OMSSA and OMSSA Browser. > > I have taken standard mgf file and run OMSSA search against it and produced > xml formatted output. > > Then I have used omssa2pepXML (part of the OMSSA distribution) to generate > pepXML file. I have also generated mzXML file using latest version of the > msconvert from the build of ProteoWizard release: 2.1.2351 (2010-11-3) on > Linux box. > > I am able to view pepXML file using pepXML Viewer, but few things are > missing. When I click first few rows of the "IONS" column I am able to view > the display (not sure how much extent this display is correct) but after > that when I click any item in the same column I am getting an error message > "Error-cannot parse scan number ...". > > I suspect this is due to the fact that the mzXML was generated from mgf > file which itself doesn't contain retention time information. > > I wonder is there anyway I can able to produce reasonable views with mzXML > file generated from the mgf file. > > Please note that I didn't have these problems when I produce mzXML file > from the RAW files. > > > > > > > > > > with regards, > > -- > Dr. Jagan Kommineni > Systems Administrator and Duty Programmer > Australian Proteomics Computational Facility > Ludwig Institute for Cancer Research, > 6th Floor, Royal Melbourne Hospital, > Royal Parade, Parkville, Victoria > Ph:03 9341-3177. > > -- Dr. Jagan Kommineni Systems Administrator and Duty Programmer Australian Proteomics Computational Facility Ludwig Institute for Cancer Research, 6th Floor, Royal Melbourne Hospital, Royal Parade, Parkville, Victoria Ph:03 9341-3177. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
