spctools-discuss  

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• 2015/03/18 Re: [spctools-discuss] how to combine search result from multiple enzyme digestion? zeyu sun
• 2015/03/16 Re: [spctools-discuss] sequence attributed to a "wrong" protein after combining pepxml delphine wood
• 2015/03/13 RE: [spctools-discuss] how to combine search result from multiple enzyme digestion? Jesse G Meyer
• 2015/03/13 [spctools-discuss] how to shown ASAPratio value in ProtXML viewer? zeyu sun
• 2015/03/13 [spctools-discuss] how to combine search result from multiple enzyme digestion? zeyu sun
• 2015/03/13 RE: [spctools-discuss] sequence attributed to a "wrong" protein after combining pepxml Eric Deutsch
• 2015/03/13 [spctools-discuss] sequence attributed to a "wrong" protein after combining pepxml Delphine
• 2015/03/12 [spctools-discuss] Re: Problems with MGF spectra data Henry Rodríguez
• 2015/03/12 Re: [spctools-discuss] Re: spectrast fail on comet pep.xml Jimmy Eng
• 2015/03/12 [spctools-discuss] Protein FDR calculation Babeh Esleta
• 2015/03/12 Re: [spctools-discuss] Re: spectrast fail on comet pep.xml David Shteynberg
• 2015/03/11 [spctools-discuss] Re: spectrast fail on comet pep.xml Rachel
• 2015/03/11 [spctools-discuss] Re: MASCOT2XML syntax error depend on file size? Heeyoun Hwang
• 2015/03/11 Re: [spctools-discuss] sqt2xml error from Sequest or ProLuCID in IP2 for TPP Heeyoun Hwang
• 2015/03/11 Re: [spctools-discuss] sqt2xml error from Sequest or ProLuCID in IP2 for TPP Jimmy Eng
• 2015/03/10 [spctools-discuss] Re: spectrast fail on comet pep.xml Rachel
• 2015/03/10 Re: [spctools-discuss] sqt2xml error from Sequest or ProLuCID in IP2 for TPP Heeyoun Hwang
• 2015/03/10 Re: [spctools-discuss] MASCOT2XML syntax error depend on file size? Heeyoun Hwang
• 2015/03/10 Re: [spctools-discuss] Re: [proteowizard-support] Question about Qexactive RAW Luis Mendoza
• 2015/03/10 Re: [spctools-discuss] Problems : converting ~.dat and ~.sqt to pepxml Luis Mendoza
• 2015/03/10 Re: [spctools-discuss] MASCOT2XML syntax error depend on file size? Luis Mendoza
• 2015/03/10 Re: [spctools-discuss] Re: spectrast fail on comet pep.xml Jimmy Eng
• 2015/03/10 [spctools-discuss] Problems with MGF spectra data Henry Rodríguez
• 2015/03/10 Re: [spctools-discuss] sqt2xml error from Sequest or ProLuCID in IP2 for TPP Jimmy Eng
• 2015/03/09 Re: [spctools-discuss] sqt2xml error from Sequest or ProLuCID in IP2 for TPP Heeyoun Hwang
• 2015/03/09 Re: [spctools-discuss] Re: spectrast fail on comet pep.xml Jimmy Eng
• 2015/03/09 Re: [spctools-discuss] sqt2xml error from Sequest or ProLuCID in IP2 for TPP Jimmy Eng
• 2015/03/09 Re: [spctools-discuss] Problems converting wiff files to mzML Xabier Martinez De Morentin
• 2015/03/09 [spctools-discuss] MASCOT2XML syntax error depend on file size? Heeyoun Hwang
• 2015/03/09 [spctools-discuss] Re: Wiff file conversion to mzML Xabier Martinez De Morentin
• 2015/03/09 [spctools-discuss] MASCOT2XML syntax error depend on the file size? Heeyoun Hwang
• 2015/03/09 [spctools-discuss] ProLuCID or Sequest to TPP Heeyoun Hwang
• 2015/03/09 Re: [spctools-discuss] Webserver issue after TPP installation Teresa Laguna
• 2015/03/09 Re: [spctools-discuss] how to convert profile data in RAW to centroid data in mzXML? Robert Willows
• 2015/03/08 [spctools-discuss] Re: spectrast fail on comet pep.xml Rachel
• 2015/03/06 Re: [spctools-discuss] Regex for specifying decoy database entry label? Luis Mendoza
• 2015/03/06 Re: [spctools-discuss] spectrast fail on comet pep.xml Luis Mendoza
• 2015/03/06 [spctools-discuss] Re: Having trouble with converting large raw files to mzML or mz[X]ML Florian
• 2015/03/06 Re: [spctools-discuss] Less protein IDs after running iProphet David Shteynberg
• 2015/03/06 Re: [spctools-discuss] Less protein IDs after running iProphet David Shteynberg
• 2015/03/06 [spctools-discuss] Less protein IDs after running iProphet Florian
• 2015/03/04 [spctools-discuss] spectrast fail on comet pep.xml Rachel
• 2015/03/03 Re: [spctools-discuss] how to convert profile data in RAW to centroid data in mzXML? zeyu sun
• 2015/03/03 RE: [spctools-discuss] how to convert profile data in RAW to centroid data in mzXML? Eric Deutsch
• 2015/03/03 Re: [spctools-discuss] how to convert profile data in RAW to centroid data in mzXML? Frédéric DELOLME
• 2015/03/03 [spctools-discuss] how to convert profile data in RAW to centroid data in mzXML? zeyu sun
• 2015/03/02 [spctools-discuss] Re: Having trouble with converting large raw files to mzML or mz[X]ML Ruby
• 2015/02/27 [spctools-discuss] Regex for specifying decoy database entry label? Brian Hampton
• 2015/02/24 RE: [spctools-discuss] Re: error in building consensus library Eric Deutsch
• 2015/02/24 RE: [spctools-discuss] Re: error in building consensus library Eric Deutsch
• 2015/02/24 Re: [spctools-discuss] Re: Is TPP working with MSGFPlus or not? Florian
• 2015/02/23 Re: [spctools-discuss] Problems : converting ~.dat and ~.sqt to pepxml Hoikeun Jeong
• 2015/02/23 [spctools-discuss] Re: error in building consensus library Rachel
• 2015/02/23 [spctools-discuss] error in building consensus library Rachel
• 2015/02/23 Re: [spctools-discuss] Problems : converting ~.dat and ~.sqt to pepxml Luis Mendoza
• 2015/02/23 [spctools-discuss] Problems : converting ~.dat and ~.sqt to pepxml Hoikeun Jeong
• 2015/02/23 [spctools-discuss] pepxml problems from ~.dat and ~.sqt Hoikeun Jeong
• 2015/02/23 Re: [spctools-discuss] Re: Is TPP working with MSGFPlus or not? David Shteynberg
• 2015/02/21 Re: [spctools-discuss] Re: Is TPP working with MSGFPlus or not? zeyu sun
• 2015/02/21 [spctools-discuss] Re: How-To get Petunia TPP working with a network share as data directory Ulrich Omasits
• 2015/02/20 [spctools-discuss] Re: How-To get Petunia TPP working with a network share as data directory zeyu sun
• 2015/02/20 [spctools-discuss] Re: How-To get Petunia TPP working with a network share as data directory zeyu sun
• 2015/02/20 [spctools-discuss] Re: [proteowizard-support] Question about Qexactive RAW Amin Momin
• 2015/02/20 [spctools-discuss] error 4: Syntax error parsing XML and Tandem2XML Amin Momin
• 2015/02/20 [spctools-discuss] Re: [proteowizard-support] Question about Qexactive RAW Amin Momin
• 2015/02/20 Re: [spctools-discuss] Re: Is TPP working with MSGFPlus or not? David Shteynberg
• 2015/02/20 Re: [spctools-discuss] X!Tandem/TPP adding modifications not specified zeyu sun
• 2015/02/20 [spctools-discuss] Re: Is TPP working with MSGFPlus or not? Jason Winget
• 2015/02/19 [spctools-discuss] Re: [proteowizard-support] Question about Qexactive RAW Chambers, Matthew
• 2015/02/19 Re: [spctools-discuss] Re: Is TPP working with MSGFPlus or not? Jesse
• 2015/02/19 [spctools-discuss] TPP keeps deleting prot.xml files -- bug & solution Ulrich Omasits
• 2015/02/19 Re: [spctools-discuss] Webserver issue after TPP installation Florian
• 2015/02/19 [spctools-discuss] Re: Is TPP working with MSGFPlus or not? Florian
• 2015/02/18 Re: [spctools-discuss] Environment variable WEBSERVER_ROOT does not exis: could not execute: C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml Gerard Such
• 2015/02/18 Re: [spctools-discuss] Environment variable WEBSERVER_ROOT does not exis: could not execute: C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml Vishal Swaroop
• 2015/02/18 [spctools-discuss] Environment variable WEBSERVER_ROOT does not exis: could not execute: C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml Gerard Such
• 2015/02/16 [spctools-discuss] Re: Transproteomic pipe line zeyu sun
• 2015/02/16 [spctools-discuss] Re: Is TPP working with MSGFPlus or not? zeyu sun
• 2015/02/16 [spctools-discuss] Re: Is TPP working with MSGFPlus or not? zeyu sun
• 2015/02/16 Re: [spctools-discuss] Webserver issue after TPP installation Vishal Swaroop
• 2015/02/16 [spctools-discuss] Is TPP working with MSGFPlus or not? Florian
• 2015/02/16 [spctools-discuss] Webserver issue after TPP installation Florian
• 2015/02/16 [spctools-discuss] webserver issue after installing TPP Florian
• 2015/02/15 [spctools-discuss] looking for help with ASAPratio zeyu sun
• 2015/02/13 [spctools-discuss] Is there any tool can simulate RNA:DNA binding? Thanks! Junyan Wu
• 2015/02/09 [spctools-discuss] using RT for improving spectral library searching (SpectraST) andreas . otto
• 2015/02/09 Re: [spctools-discuss] bad allocation Jimmy Eng
• 2015/02/09 [spctools-discuss] bad allocation Ruby
• 2015/02/05 Re: [spctools-discuss] Re: protein prophet error Jesse
• 2015/02/05 [spctools-discuss] TPP Ana
• 2015/02/05 [spctools-discuss] Transproteomic pipe line Ana
• 2015/02/04 [spctools-discuss] Re: protein prophet error Alves
• 2015/02/03 [spctools-discuss] protein prophet error Jesse
• 2015/02/02 [spctools-discuss] first start TPP...error! Elvira Inglese
• 2015/01/29 Re: [spctools-discuss] COMET issues Sebastian Wiese
• 2015/01/29 [spctools-discuss] Windows installer clears PATH variable windenthusiast
• 2015/01/28 Re: [spctools-discuss] COMET issues Michael Hoopmann
• 2015/01/28 [spctools-discuss] COMET issues Sebastian Wiese
• 2015/01/28 [spctools-discuss] TPP4.8.0 - Display all peptides on protein primary sequence in pepxml viewer Adam Oberstein
• 2015/01/27 [spctools-discuss] iPRG2015 - Deadline extended! Henry Lam
• 2015/01/20 Re: [spctools-discuss] TPP-4.7 Mac OS X - PepXMLViewer - memory leakage Ulrich auf dem Keller
• 2015/01/17 [spctools-discuss] Xpress problem w/ diglycyl-lysine + SILAC-lysine Jesse
• 2015/01/15 Re: [spctools-discuss] TPP 4.8 error with xinteract - runtime? Sarah Parker
• 2015/01/15 Re: [spctools-discuss] TPP 4.8 error with xinteract - runtime? David Shteynberg
• 2015/01/15 Re: [spctools-discuss] TPP 4.8 error with xinteract - runtime? Sarah Parker
• 2015/01/15 Re: [spctools-discuss] TPP 4.8 error with xinteract - runtime? David Shteynberg
• 2015/01/15 [spctools-discuss] TPP 4.8 error with xinteract - runtime? Sarah Parker
• 2015/01/12 Re: [spctools-discuss] TPP 4.8.0 compile fatal error Joseph Slagel
• 2015/01/12 Re: [spctools-discuss] TPP 4.8.0 compile fatal error Brian Hampton
• 2015/01/12 Re: [spctools-discuss] TPP 4.8.0 compile fatal error Joseph Slagel
• 2015/01/12 [spctools-discuss] TPP 4.8.0 compile fatal error Brian Hampton
• 2015/01/06 Re: [spctools-discuss] How-To get Petunia TPP working with a network share as data directory Rebekah Dawson
• 2015/01/05 [spctools-discuss] How-To get Petunia TPP working with a network share as data directory Ulrich Omasits
• 2015/01/02 Re: [spctools-discuss] X! TANDEM error David Shteynberg
• 2015/01/01 Re: [spctools-discuss] X! TANDEM error Norbert Mehlmer
• 2014/12/17 Re: [spctools-discuss] PTM prophet and DiMethylation David Shteynberg
• 2014/12/17 Re: [spctools-discuss] Call for Participants: Proteome Informatics Research Group Community Study on Label-free Quantitative Proteomics Silvia Rocchiccioli
• 2014/12/16 Re: [spctools-discuss] PTM prophet and DiMethylation Jesse
• 2014/12/16 Re: [spctools-discuss] PTM prophet and DiMethylation David Shteynberg
• 2014/12/16 Re: [spctools-discuss] PTM prophet and DiMethylation Jesse
• 2014/12/15 Re: [spctools-discuss] PTM prophet and DiMethylation David Shteynberg
• 2014/12/15 Re: [spctools-discuss] PTM prophet and DiMethylation Jesse
• 2014/12/12 Re: [spctools-discuss] Command FAILED RETURN CODE:256 lei
• 2014/12/10 Re: [spctools-discuss] Command FAILED RETURN CODE:256 Joseph Slagel
• 2014/12/09 Re: [spctools-discuss] RTCalc (ANN) Chih-Chiang Tsou
• 2014/12/09 Re: [spctools-discuss] RTCalc (ANN) [email protected]
• 2014/12/08 Re: [spctools-discuss] RTCalc (ANN) David Shteynberg
• 2014/12/08 [spctools-discuss] Command FAILED RETURN CODE:256 lei
• 2014/12/08 Re: [spctools-discuss] xcorr (sequest) and charge filtering for pep.xml files andreas . otto
• 2014/12/06 Re: [spctools-discuss] RTCalc (ANN) Chih-Chiang Tsou
• 2014/12/05 Re: [spctools-discuss] TPP 4.8 (Windows) tandem output path not correct? Brian Hampton
• 2014/12/05 Re: [spctools-discuss] xcorr (sequest) and charge filtering for pep.xml files David Shteynberg
• 2014/12/05 Re: [spctools-discuss] RTCalc (ANN) David Shteynberg
• 2014/12/05 Re: [spctools-discuss] RTCalc (ANN) Chih-Chiang Tsou
• 2014/12/05 [spctools-discuss] xcorr (sequest) and charge filtering for pep.xml files andreas . otto
• 2014/12/04 Re: [spctools-discuss] TPP 4.8 msconvert error Luis Mendoza
• 2014/12/04 Re: [spctools-discuss] TPP 4.8 (Windows) tandem output path not correct? David Shteynberg
• 2014/12/04 [spctools-discuss] TPP 4.8 (Windows) tandem output path not correct? Brian Hampton
• 2014/12/04 Re: [spctools-discuss] Problem in TPP 4.7.1 error output from Peptide Prophet Brian Hampton
• 2014/12/04 [spctools-discuss] TPP 4.8 msconvert error Brian Hampton
• 2014/12/04 Re: [spctools-discuss] Problem in TPP 4.7.1 error output from Peptide Prophet David Shteynberg
• 2014/12/04 [spctools-discuss] Problem in TPP 4.7.1 error output from Peptide Prophet Brian Hampton
• 2014/12/02 Re: [spctools-discuss] Re: TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM) David Shteynberg
• 2014/12/02 Re: [spctools-discuss] Re: TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM) Hannes Röst
• 2014/12/02 [spctools-discuss] Xtandem Fasta_pro executable fails handling big Fasta entries Canan Has
• 2014/12/01 Re: [spctools-discuss] Re: TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM) Alejandro
• 2014/12/01 Re: [spctools-discuss] Re: TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM) Brian Hampton
• 2014/12/01 Re: [spctools-discuss] question on PeptideProphet model-quality checks & problem with forced models David Shteynberg
• 2014/12/01 [spctools-discuss] Re: TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM) Alejandro
• 2014/11/28 RE: [spctools-discuss] spectraST error Eric Deutsch
• 2014/11/28 [spctools-discuss] PTMProphet error 钟传奇
• 2014/11/27 Re: [spctools-discuss] TPP 4.8 How to view and export Xpress results with new ProtXML viewer Luis Mendoza
• 2014/11/27 [spctools-discuss] TPP 4.8 How to view and export Xpress results with new ProtXML viewer Alejandro
• 2014/11/27 [spctools-discuss] Re: TPP 4.8.0 Release is now available Alejandro
• 2014/11/26 Re: [spctools-discuss] spectraST error delphine wood
• 2014/11/25 [spctools-discuss] Xcorr filtering of pep.xml bert heinz
• 2014/11/21 [spctools-discuss] TPP 4.8.0 Release is now available Joseph Slagel
• 2014/11/20 Re: [spctools-discuss] Unable to explain peptide weights in Protein Prophet Luis Mendoza
• 2014/11/20 RE: [spctools-discuss] spectraST error Eric Deutsch
• 2014/11/20 Re: [spctools-discuss] spectraST error David Shteynberg
• 2014/11/20 Re: [spctools-discuss] spectraST error delphine wood
• 2014/11/20 Re: [spctools-discuss] spectraST error Rene B
• 2014/11/20 Re: [spctools-discuss] spectraST error delphine wood
• 2014/11/19 [spctools-discuss] TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM) Alejandro
• 2014/11/18 Re: [spctools-discuss] spectraST error David Shteynberg
• 2014/11/18 [spctools-discuss] spectraST error Delphine
• 2014/11/18 [spctools-discuss] Re: MaRiMba fail with 18 protein mix file Victor Manuel Solis Mezarino
• 2014/11/18 [spctools-discuss] Re: Problem with MARIMBA, see ERROR messages below. Victor Manuel Solis Mezarino
• 2014/11/17 [spctools-discuss] Unable to explain peptide weights in Protein Prophet Ira Cooke
• 2014/11/16 Re: [spctools-discuss] Error writing run Javier Sotillo Gallego
• 2014/11/12 Re: [spctools-discuss] Error writing run Joseph Slagel
• 2014/11/12 [spctools-discuss] Error writing run Javier Sotillo Gallego
• 2014/11/07 Re: [spctools-discuss] translateDNA2AA-FASTA Luis Mendoza
• 2014/11/04 Re: [spctools-discuss] FWD: Deprecated CGI endform in tpp_gui.pl caused centos install to fail Luis Mendoza
• 2014/10/30 Re: [spctools-discuss] translateDNA2AA-FASTA Veronica Mutchler
• 2014/10/30 Re: [spctools-discuss] translateDNA2AA-FASTA Jimmy Eng
• 2014/10/30 Re: [spctools-discuss] translateDNA2AA-FASTA Veronica Mutchler
• 2014/10/27 Re: [spctools-discuss] MAYU on peptideprophet and iprophet results David Shteynberg
• 2014/10/27 Re: [spctools-discuss] translateDNA2AA-FASTA Veronica Mutchler
• 2014/10/27 [spctools-discuss] MAYU on peptideprophet and iprophet results Huoming Zhang
• 2014/10/24 Re: [spctools-discuss] Re: parsing error for pepXML from mascot result Etienne Caron
• 2014/10/24 Re: [spctools-discuss] translateDNA2AA-FASTA Jimmy Eng
• 2014/10/24 [spctools-discuss] translateDNA2AA-FASTA veronica . t . mutchler
• 2014/10/24 [spctools-discuss] ASAPRatio on unlabeled samples? veronica . t . mutchler
• 2014/10/24 Re: [spctools-discuss] Re: parsing error for pepXML from mascot result David Shteynberg
• 2014/10/24 Re: [spctools-discuss] Re: parsing error for pepXML from mascot result Etienne Caron
• 2014/10/22 Re: [spctools-discuss] Many potential modifications and X!Tandem : long search duration. Frédéric DELOLME
• 2014/10/21 [spctools-discuss] .dat files/waters .raw data files Maria Jose Martinez
• 2014/10/21 [spctools-discuss] Can't kill command: no job id passed! 정진선
• 2014/10/20 Re: [spctools-discuss] does the search using multiple threads for X!tandem affect k-score? Huoming Zhang
• 2014/10/20 Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge 李桂林
• 2014/10/20 Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge 李桂林
• 2014/10/20 [spctools-discuss] Re: Export result data for blast? zeyu sun
• 2014/10/20 Re: [spctools-discuss] does the search using multiple threads for X!tandem affect k-score? David Shteynberg
• 2014/10/20 [spctools-discuss] does the search using multiple threads for X!tandem affect k-score? Huoming Zhang
• 2014/10/20 Re: [spctools-discuss] Many potential modifications and X!Tandem : long search duration. David Shteynberg
• 2014/10/20 [spctools-discuss] Many potential modifications and X!Tandem : long search duration. DELOLME Frederic
• 2014/10/17 Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge David Shteynberg
• 2014/10/17 Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge 李桂林
• 2014/10/16 Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge David Shteynberg

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